fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G41315 MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G41315.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 339
EcoRV GAT|ATC 157
HindIII A|AGCTT 182, 1158
HpaI GTT|AAC 1615
KpnI GGTAC|C 559
StyI C|C[AT][AT]GG 537
XhoI C|TCGAG 1456


Click here to view TAIR data

>AT5G41315.1 length:1914
ATGGCTACCG GACAAAACAG AACAACTGTG CCAGAGAATC TGAAGAAACA 
50
CCTCGCAGTT TCAGTTCGAA ACATTCAATG GAGTTATGGT ATCTTTTGGT 
100
CTGTCTCTGC TTCTCAGTCT GGAGTTTTAG AATGGGGAGA TGGATACTAT 
150
AATGGAGATA TCAAAACGAG GAAGACGATT CAAGCTTCGG AGATCAAAGC 
200
TGATCAGCTT GGTCTACGGA GGAGCGAGCA GCTTAGCGAG CTTTACGAGT 
250
CTCTCTCCGT CGCTGAATCT TCTTCTTCAG GCGTTGCTGC CGGATCTCAA 
300
GTCACCAGAC GAGCTTCCGC CGCCGCACTT TCACCGGAAG ATCTCGCCGA 
350
CACCGAGTGG TACTATTTGG TTTGTATGTC TTTCGTCTTC AACATTGGTG 
400
AAGGAATGCC TGGACGGACG TTTGCAAACG GTGAACCGAT ATGGTTGTGC 
450
AACGCTCATA CGGCGGATAG TAAAGTGTTT AGCCGTTCTC TTCTAGCAAA 
500
AAGTGCTGCG GTTAAGACAG TGGTTTGCTT CCCGTTCCTT GGAGGAGTCG 
550
TTGAGATTGG TACCACAGAA CATATTACGG AAGACATGAA TGTAATACAA 
600
TGCGTGAAGA CATCATTCCT CGAAGCCCCT GATCCGTACG CTACAATATT 
650
ACCAGCAAGA TCCGATTATC ACATCGACAA CGTTCTTGAT CCGCAACAGA 
700
TTCTAGGCGA CGAGATTTAC GCGCCTATGT TCAGTACGGA GCCTTTTCCA 
750
ACAGCTTCTC CGAGCAGAAC TACCAACGGT TTCGATCAAG AACATGAACA 
800
AGTAGCAGAT GATCATGATT CTTTCATGAC CGAAAGAATC ACTGGAGGAG 
850
CTTCTCAGGT GCAAAGCTGG CAGCTCATGG ACGACGAGCT TAGTAACTGC 
900
GTTCACCAGT CGCTAAATTC CAGCGATTGC GTCTCTCAAA CGTTTGTTGA 
950
AGGGGCGGCT GGACGGGTTG CTTACGGTGC AAGAAAGAGT AGAGTTCAAA 
1000
GACTAGGGCA AATTCAAGAG CAACAGAGAA ATGTGAAGAC ATTGTCATTT 
1050
GATCCAAGAA ACGACGACGT TCATTACCAA AGTGTGATCT CAACGATTTT 
1100
TAAGACCAAC CATCAGTTAA TTCTCGGACC GCAGTTTCGA AACTGCGATA 
1150
AACAGTCAAG CTTCACTAGG TGGAAGAAAT CATCGTCATC ATCATCAGGA 
1200
ACCGCCACGG TCACGGCACC ATCACAAGGA ATGTTAAAGA AAATTATTTT 
1250
CGATGTTCCG CGAGTGCACC AGAAAGAGAA GTTAATGTTG GACTCACCAG 
1300
AAGCCAGAGA TGAAACTGGG AACCATGCGG TTTTAGAGAA GAAGCGCCGC 
1350
GAGAAATTGA ACGAACGGTT CATGACCTTG AGAAAAATCA TTCCGTCAAT 
1400
CAACAAGATC GATAAAGTAT CGATTCTTGA CGATACGATA GAGTATCTTC 
1450
AAGAACTCGA GAGACGGGTT CAAGAACTAG AATCTTGCAG AGAATCAACC 
1500
GATACAGAGA CTCGTGGGAC GATGACGATG AAGAGGAAGA AACCATGCGA 
1550
CGCAGGAGAA AGAACATCAG CTAATTGCGC AAATAATGAA ACAGGAAATG 
1600
GGAAGAAGGT GTCGGTTAAC AATGTTGGTG AAGCCGAGCC AGCAGATACC 
1650
GGTTTTACTG GTTTAACCGA TAATTTAAGG ATCGGTTCGT TTGGTAATGA 
1700
GGTGGTTATT GAGCTTAGAT GTGCTTGGAG AGAAGGAGTA TTGCTTGAGA 
1750
TAATGGATGT GATTAGTGAT CTCCATTTGG ATTCTCATTC GGTTCAATCC 
1800
TCGACCGGAG ACGGTTTGCT CTGCTTAACC GTCAATTGCA AGCACAAGGG 
1850
GTCAAAAATA GCGACACCAG GAATGATCAA AGAAGCACTT CAAAGGGTTG 
1900
CATGGATCTG TTGA
1950

>AT5G41315.1 longest ORF length:637
MATGQNRTTV PENLKKHLAV SVRNIQWSYG IFWSVSASQS GVLEWGDGYY 
50
NGDIKTRKTI QASEIKADQL GLRRSEQLSE LYESLSVAES SSSGVAAGSQ 
100
VTRRASAAAL SPEDLADTEW YYLVCMSFVF NIGEGMPGRT FANGEPIWLC 
150
NAHTADSKVF SRSLLAKSAA VKTVVCFPFL GGVVEIGTTE HITEDMNVIQ 
200
CVKTSFLEAP DPYATILPAR SDYHIDNVLD PQQILGDEIY APMFSTEPFP 
250
TASPSRTTNG FDQEHEQVAD DHDSFMTERI TGGASQVQSW QLMDDELSNC 
300
VHQSLNSSDC VSQTFVEGAA GRVAYGARKS RVQRLGQIQE QQRNVKTLSF 
350
DPRNDDVHYQ SVISTIFKTN HQLILGPQFR NCDKQSSFTR WKKSSSSSSG 
400
TATVTAPSQG MLKKIIFDVP RVHQKEKLML DSPEARDETG NHAVLEKKRR 
450
EKLNERFMTL RKIIPSINKI DKVSILDDTI EYLQELERRV QELESCREST 
500
DTETRGTMTM KRKKPCDAGE RTSANCANNE TGNGKKVSVN NVGEAEPADT 
550
GFTGLTDNLR IGSFGNEVVI ELRCAWREGV LLEIMDVISD LHLDSHSVQS 
600
STGDGLLCLT VNCKHKGSKI ATPGMIKEAL QRVAWIC
650