Locus |
Common name |
Short description |
AT5G41410 |
BEL1 |
BELL 1, POX (plant homeobox) family protein (.1) |
>AT5G41410.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AciI, AfeI, AflII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BssHII, BssSI, BstAPI, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PpuMI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
1184, 1199 |
AclI
| AA|CGTT |
1212, 1548 |
AflIII
| A|CPuPyGT |
780 |
AgeI
| A|CCGGT |
1737 |
AluI
| AG|CT |
258, 604, 612, 855, 1033, 1117, 1219, 1576, 1807 |
AlwNI
| CAGNNN|CTG |
262 |
ApoI
| Pu|AATTPy |
1782, 1797 |
AseI
| AT|TAAT |
64, 1327 |
AvaII
| G|G[AT]CC |
1436, 1442, 1734 |
BalI
| TGG|CCA |
1698 |
BanII
| GPuGCPy|C |
1808 |
BclI
| T|GATCA |
249, 741, 1770 |
BfaI
| C|TAG |
929 |
BglII
| A|GATCT |
131 |
BsaAI
| PyAC|GTPu |
1082, 1607 |
BsaBI
| GATNN|NNATC |
113, 215, 254, 1420, 1769 |
BsaHI
| GPu|CGPyC |
1175 |
BsaJI
| C|CNNGG |
75, 357, 1096, 1171, 1524 |
BsaWI
| [AT]|CCGG[AT] |
454, 1434, 1464, 1507, 1737 |
BsiHKAI
| G[AT]GC[AT]|C |
1808 |
BslI
| CCNNNNN|NNGG |
357, 1185 |
Bsp1286I
| G[GAT]GC[CAT]|C |
1808 |
BspDI
| AT|CGAT |
1423 |
BspHI
| T|CATGA |
1821 |
BsrDI
| GCAATGNN| |
298, 972 |
BsrFI
| Pu|CCGGPy |
1737 |
BsrI
| ACTGGN| |
1291 |
BssKI
| |CCNGG |
1439 |
BstBI
| TT|CGAA |
415 |
BstEII
| G|GTNACC |
1571 |
BstF5I
| GGATGNN| |
195 |
BstUI
| CG|CG |
1184, 1199 |
BstYI
| Pu|GATCPy |
71, 131 |
BtgI
| C|CPuPyGG |
1096, 1524 |
Cac8I
| GCN|NGC |
1190 |
Cfr10I
| [AG]|CCGG[TC] |
1737 |
ClaI
| AT|CGAT |
1423 |
DdeI
| C|TNAG |
175, 420, 618 |
DpnI
| GA-CH3|TC |
8, 70, 107, 130, 209, 248, 740, 1112, 1420, 1450, 1769 |
DpnII
| |GATC |
8, 70, 107, 130, 209, 248, 740, 1112, 1420, 1450, 1769 |
DraI
| TTT|AAA |
993 |
DraIII
| CACNNN|GTG |
1610 |
EaeI
| Py|GGCCPu |
1698 |
Fnu4HI
| GC|NGC |
900, 906, 918, 1077, 1124, 1186 |
HaeIII
| GG|CC |
1279, 1602, 1697 |
HhaI
| GCG|C |
1200 |
HinP1I
| G|CGC |
1200 |
HincII
| GTPy|PuAC |
1159, 1545 |
HindIII
| A|AGCTT |
1034, 1118 |
HinfI
| G|ANTC |
254, 270, 479, 599, 1016, 1151, 1467 |
HpaII
| C|CGG |
453, 1433, 1439, 1463, 1506, 1736 |
Hpy188I
| TCN|GA |
68, 128, 207, 230, 251, 421, 476, 575, 818, 1253, 1778 |
Hpy99I
| CG[AT]CG| |
1753 |
HpyCH4III
| ACN|GT |
1097, 1372, 1567, 1654, 1711 |
HpyCH4IV
| A|CGT |
1081, 1211, 1547, 1606, 1614, 1639 |
HpyCH4V
| TG|CA |
293, 629, 1075, 1330 |
MboI
| |GATC |
8, 70, 107, 130, 209, 248, 740, 1112, 1420, 1450, 1769 |
MscI
| TGG|CCA |
1698 |
MseI
| T|TAA |
63, 300, 858, 992, 1326 |
MslI
| CAPyNN|NNPuTG |
157, 496 |
MspI
| C|CGG |
453, 1433, 1439, 1463, 1506, 1736 |
MwoI
| GCNNNNN|NNGC |
845, 906, 966 |
N.BstNBI
| GAGTCNNNN|N |
604 |
NciI
| CC|[CG]GG |
1439 |
NcoI
| C|CATGG |
1524 |
NlaIII
| CATG| |
151, 283, 746, 779, 808, 844, 1523, 1820 |
NlaIV
| GGN|NCC |
1437 |
NspI
| PuCATG|Py |
780 |
PciI
| A|CATGT |
780 |
PmlI
| CAC|GTG |
1082, 1607 |
PshAI
| GACNN|NNGTC |
722 |
RsaI
| GT|AC |
243, 1369, 1564 |
SacI
| GAGCT|C |
1808 |
Sau3AI
| |GATC |
8, 70, 107, 130, 209, 248, 740, 1112, 1420, 1450, 1769 |
Sau96I
| G|GNCC |
1280, 1436, 1442, 1602, 1734 |
ScrFI
| CC|NGG |
1439 |
SmlI
| C|TPyPuAG |
608, 802, 1691 |
SspI
| AAT|ATT |
1745 |
StyI
| C|C[AT][AT]GG |
75, 357, 1171, 1524 |
Taqƒ¿I
| T|CGA |
414, 849, 1110, 1422, 1458, 1754 |
TfiI
| G|A[AT]TC |
254, 270, 479, 1016, 1467 |
TseI
| G|C[AT]GC |
906, 1077 |
Tsp45I
| |GT[CG]AC |
22, 520, 724, 1206, 1485, 1510, 1581, 1612, 1683 |
Tsp509I
| |AATT |
1316, 1781, 1796, 1812 |
TspRI
| NNCA[CG]TGNN| |
952, 1683 |
XmnI
| GAANN|NNTTC |
1238 |
Click here to view TAIR data
>AT5G41410.1 length:1836
ATGGCAAGAG ATCAGTTCTA TGGTCACAAT AACCATCATC ATCAAGAGCA | 50 |
ACAACATCAA ATGATTAATC AGATCCAAGG GTTTGATGAG ACAAACCAAA | 100 |
ACCCAACCGA TCATCATCAT TACAATCATC AGATCTTTGG CTCAAACTCC | 150 |
AACATGGGTA TGATGATAGA CTTCTCTAAG CAACAACAGA TTAGGATGAC | 200 |
AAGTGGTTCG GATCATCATC ATCATCATCA TCAGACAAGT GGTGGTACTG | 250 |
ATCAGAATCA GCTTCTGGAA GATTCTTCAT CTGCCATGAG ACTATGCAAT | 300 |
GTTAATAATG ATTTCCCAAG TGAAGTAAAT GATGAGAGAC CACCACAAAG | 350 |
ACCAAGCCAA GGTCTTTCCC TTTCTCTCTC CTCTTCAAAT CCTACAAGCA | 400 |
TCAGTCTCCA ATCTTTCGAA CTCAGACCCC AACAACAACA ACAACAAGGG | 450 |
TATTCCGGTA ATAAATCAAC ACAACATCAG AATCTCCAAC ACACGCAGAT | 500 |
GATGATGATG ATGATGAATA GTCACCACCA AAACAACAAC AATAACAATC | 550 |
ATCAGCATCA TAATCATCAT CAGTTTCAGA TTGGGAGTTC CAAGTATTTG | 600 |
AGTCCAGCTC AAGAGCTACT GAGTGAGTTT TGCAGTCTTG GAGTAAAGGA | 650 |
AAGCGATGAA GAAGTGATGA TGATGAAGCA TAAGAAGAAG CAAAAGGGTA | 700 |
AACAACAAGA AGAGTGGGAC ACAAGTCACC ACAGCAACAA TGATCAACAT | 750 |
GACCAATCTG CGACTACTTC TTCAAAGAAA CATGTTCCAC CACTTCACTC | 800 |
TCTTGAGTTC ATGGAACTTC AGAAAAGAAA AGCCAAGTTG CTCTCCATGC | 850 |
TCGAAGAGCT TAAAAGAAGA TATGGACATT ACCGAGAGCA AATGAGAGTT | 900 |
GCGGCGGCAG CCTTTGAAGC GGCGGTTGGA CTAGGAGGGG CAGAGATATA | 950 |
CACTGCGTTA GCGTCAAGGG CAATGTCAAG ACACTTTCGG TGTTTAAAAG | 1000 |
ACGGACTTGT GGGACAGATT CAAGCAACAA GTCAAGCTTT GGGAGAGAGA | 1050 |
GAAGAGGATA ATCGTGCGGT TTCTATTGCA GCACGTGGAG AAACTCCACG | 1100 |
GTTGAGATTG CTCGATCAAG CTTTGCGGCA ACAGAAATCG TATCGCCAAA | 1150 |
TGACTCTTGT TGACGCTCAT CCTTGGCGTC CACAACGCGG CTTGCCTGAA | 1200 |
CGCGCAGTCA CAACGTTGAG AGCTTGGCTC TTTGAACACT TTCTTCACCC | 1250 |
ATATCCGAGC GATGTTGATA AGCATATATT GGCCCGACAA ACTGGTTTAT | 1300 |
CAAGAAGTCA GGTATCAAAT TGGTTTATTA ATGCAAGAGT TAGGCTATGG | 1350 |
AAACCAATGA TTGAAGAAAT GTACTGTGAA GAAACAAGAA GTGAACAAAT | 1400 |
GGAGATTACA AACCCGATGA TGATCGATAC TAAACCGGAC CCGGACCAGT | 1450 |
TGATCCGTGT CGAACCGGAA TCTTTATCCT CAATAGTGAC AAACCCTACA | 1500 |
TCCAAATCCG GTCACAACTC AACCCATGGA ACGATGTCGT TAGGGTCAAC | 1550 |
GTTTGACTTT TCCTTGTACG GTAACCAAGC TGTGACATAC GCTGGTGAAG | 1600 |
GAGGGCCACG TGGTGACGTT TCCTTGACGC TTGGGTTACA ACGTAACGAT | 1650 |
GGTAACGGTG GTGTGAGTTT AGCGTTGTCT CCAGTGACGG CTCAAGGTGG | 1700 |
CCAACTTTTC TACGGTAGAG ACCACATTGA AGAAGGACCG GTTCAATATT | 1750 |
CAGCGTCGAT GTTAGATGAT GATCAAGTTC AGAATTTGCC TTATAGGAAT | 1800 |
TTGATGGGAG CTCAATTACT TCATGATATT GTTTGA | 1850 |
>AT5G41410.1 longest ORF length:611
MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH YNHQIFGSNS | 50 |
NMGMMIDFSK QQQIRMTSGS DHHHHHHQTS GGTDQNQLLE DSSSAMRLCN | 100 |
VNNDFPSEVN DERPPQRPSQ GLSLSLSSSN PTSISLQSFE LRPQQQQQQG | 150 |
YSGNKSTQHQ NLQHTQMMMM MMNSHHQNNN NNNHQHHNHH QFQIGSSKYL | 200 |
SPAQELLSEF CSLGVKESDE EVMMMKHKKK QKGKQQEEWD TSHHSNNDQH | 250 |
DQSATTSSKK HVPPLHSLEF MELQKRKAKL LSMLEELKRR YGHYREQMRV | 300 |
AAAAFEAAVG LGGAEIYTAL ASRAMSRHFR CLKDGLVGQI QATSQALGER | 350 |
EEDNRAVSIA ARGETPRLRL LDQALRQQKS YRQMTLVDAH PWRPQRGLPE | 400 |
RAVTTLRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW | 450 |
KPMIEEMYCE ETRSEQMEIT NPMMIDTKPD PDQLIRVEPE SLSSIVTNPT | 500 |
SKSGHNSTHG TMSLGSTFDF SLYGNQAVTY AGEGGPRGDV SLTLGLQRND | 550 |
GNGGVSLALS PVTAQGGQLF YGRDHIEEGP VQYSASMLDD DQVQNLPYRN | 600 |
LMGAQLLHDI V | 650 |
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