fioreDB : Database for Crop and Flower Bio-engineering by CRES-T system

fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G41410 (BEL1)

Alias

BEL1

TF Classification

FioreDB	HD (Click to show phylogenetic tree)
RARTF	HB / BELL1
AtTFDB	Homeobox / BEL
PlnTFDB	HB (v3.0), HB (v1.0)
DATF	HB

TAIR short description

BELL 1, POX (plant homeobox) family protein (.1)

TAIR annotation

Homeodomain protein required for ovule identity.Loss of function mutations show homeotic conversion of integuments to carpels.Forms heterodimers with STM and KNAT1. Interacts with AG-SEP heterodimers is thought to restrict WUS expression. BEL interacts with MADS box dimers composed of SEP1(or SEP3) and AG, SHP1, SHP2 and STK. The interaction of BEL1 with AG-SEP3 is required for proper integument development and specification of integument identity. (.1)

Gene model

Gene model	cDNA support
AT5G41410.1	40

Entry clone (w/o stop)

RE_0575_x

External link

General info	TAIR DATA
Genomic seq	TAIR seq viewer
SNP	SALK SNP Viewer
T-DNA tag line	T-DNA Express
miRNA	Search ASRP
Phylogeny	SALAD database
Promoter	ppdb

Microarray data
FioreDB
ATTED-II	ATTED-II data
NCBI GEO	NCBI GEO profile
NASC	NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator	Genevestigator
eFP Browser	Developmental Map Abiotic Stress
AtGenExpress	Development Hormone Abiotic Stress Light Pathogen

Gene Ontology (GO)

(F) 3677: DNA or RNA binding	->DNA binding
(F) 3700: transcription factor activity	->transcription factor activity, sequence-specific DNA binding
(P) 48481: developmental processes	->plant ovule development
(F) 5515: protein binding	->protein binding
(C) 5634: nucleus	->nucleus
(C) 5829: cytosol	->cytosol
(P) 6351: transcription,DNA-dependent	->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent	->regulation of transcription, DNA-templated
(C) 9506: other cellular components	->plasmodesma

miRNA/tasiRNA

Orthologs

	Type
	Ia	Ib	II	III	Total
poplar	1		3		4
soybean		1			1
rice		1			1
sorghum		1			1
physcomitrella
Total	1	3	3		7

Repression motif

QRPSQGLSLSLSSSNP at 120/611 in AT5G41410.1
PRGDVSLTLGLQRNDG at 540/611 in AT5G41410.1

Repression motif
in putative orthologs

ERPSQGLSLSLCSSNP at 165/663 in poplar Pt031903 (Type II)
NGGGVSLTLGLQQHGG at 597/663 in poplar Pt031903 (Type II)
ERPSQGLSLSLCPSNP at 165/664 in poplar Pt012011 (Type Ia)
GGGGVSLTLGLQQHGG at 598/664 in poplar Pt012011 (Type Ia)
ERPSQGLSLSLCPSNP at 165/664 in poplar Pt012009 (Type II)
GGGGVSLTLGLQQHGG at 598/664 in poplar Pt012009 (Type II)
ERPSQGLSLSLSSTNP at 170/613 in soybean Gm019908 (Type Ib)
HSGGVSLTLGLQQHGE at 546/613 in soybean Gm019908 (Type Ib)
HGGAVSLTLGLQQQPF at 493/593 in sorghum Sb033232 (Type Ib)
ERPSQGLSLSLCPSNP at 165/664 in poplar Pt012010 (Type II)
GGGGVSLTLGLQQHGG at 598/664 in poplar Pt012010 (Type II)
HGGAVSLTLGLQQQQQ at 466/530 in rice Os023228 (Type Ib)