Locus |
Common name |
Short description |
AT5G42780 |
ATHB27, ZHD13 |
ZINC FINGER HOMEODOMAIN 13, homeobox protein 27 (.1) |
>AT5G42780.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
483 |
EcoRI
| G|AATTC |
30 |
EcoRV
| GAT|ATC |
220 |
HindIII
| A|AGCTT |
598 |
Click here to view TAIR data
>AT5G42780.1 length:729
ATGGATGAGA TAAAACCAAA GAAAGAAGAG AATTCCAAAC GACGTCGTAA | 50 |
CGTCAAACCC ATTTGCCGTG AAACTGGAGA CCACGTCCAT TATCTTCCAA | 100 |
CATGCAAAAC CAAGCCCAAA CCCACGCGTA CTCATCACGC GCCACCACCG | 150 |
ATCCTCGACT CAATCTTCAA AGTCACTCAC AAGCCACACT ACTACGAATG | 200 |
CAGGAAGAAT CACGCCGCTG ATATCGGAAC CACCGCTTAC GACGGCTGCG | 250 |
GCGAGTTTGT TAGCTCCACC GGTGAAGAAG ATTCTTTAAA CTGCGCCGCA | 300 |
TGTGGCTGTC ACCGTAACTT CCACCGTGAA GAGTTAATCC CGGAGAACGG | 350 |
CGGCGTTACT GAGACGGTTC TTGAAGTTCT CAAGATTTCA TCGTGTCAGT | 400 |
TTCGTCGGAT CTTTTGCTCA CCTTACGGCG GTGGAAAAAG CGAAGGAAAG | 450 |
AAGAAGAAGA AGGAGAAGGA GAGTTATGGA GGGGATCCGA TAATTAAAGA | 500 |
TCGATTCGGC GGTGCGGAGG AGGAGGAGGG GATAGTGAAG AGGTTGAAAA | 550 |
CGAAGTTCAC GGCGGAGCAA ACGGAGAAAA TGAGGGATTA TGCGGAGAAG | 600 |
CTTCGGTGGA AGGTGAGACC TGAGAGGCAG GAGGAGGTTG AAGAGTTTTG | 650 |
TGTAGAGATT GGAGTGAATC GGAAGAATTT TAGGATTTGG ATGAATAATC | 700 |
ACAAGGATAA AATTATAATT GATGAATGA | 750 |
>AT5G42780.1 longest ORF length:242
MDEIKPKKEE NSKRRRNVKP ICRETGDHVH YLPTCKTKPK PTRTHHAPPP | 50 |
ILDSIFKVTH KPHYYECRKN HAADIGTTAY DGCGEFVSST GEEDSLNCAA | 100 |
CGCHRNFHRE ELIPENGGVT ETVLEVLKIS SCQFRRIFCS PYGGGKSEGK | 150 |
KKKKEKESYG GDPIIKDRFG GAEEEEGIVK RLKTKFTAEQ TEKMRDYAEK | 200 |
LRWKVRPERQ EEVEEFCVEI GVNRKNFRIW MNNHKDKIII DE | 250 |
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