fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G42780 ATHB27, ZHD13 ZINC FINGER HOMEODOMAIN 13, homeobox protein 27 (.1)

>AT5G42780.1 CDS map

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Uncut enzymes: ApaI, AscI, BglII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 483
EcoRI G|AATTC 30
EcoRV GAT|ATC 220
HindIII A|AGCTT 598


Click here to view TAIR data

>AT5G42780.1 length:729
ATGGATGAGA TAAAACCAAA GAAAGAAGAG AATTCCAAAC GACGTCGTAA 
50
CGTCAAACCC ATTTGCCGTG AAACTGGAGA CCACGTCCAT TATCTTCCAA 
100
CATGCAAAAC CAAGCCCAAA CCCACGCGTA CTCATCACGC GCCACCACCG 
150
ATCCTCGACT CAATCTTCAA AGTCACTCAC AAGCCACACT ACTACGAATG 
200
CAGGAAGAAT CACGCCGCTG ATATCGGAAC CACCGCTTAC GACGGCTGCG 
250
GCGAGTTTGT TAGCTCCACC GGTGAAGAAG ATTCTTTAAA CTGCGCCGCA 
300
TGTGGCTGTC ACCGTAACTT CCACCGTGAA GAGTTAATCC CGGAGAACGG 
350
CGGCGTTACT GAGACGGTTC TTGAAGTTCT CAAGATTTCA TCGTGTCAGT 
400
TTCGTCGGAT CTTTTGCTCA CCTTACGGCG GTGGAAAAAG CGAAGGAAAG 
450
AAGAAGAAGA AGGAGAAGGA GAGTTATGGA GGGGATCCGA TAATTAAAGA 
500
TCGATTCGGC GGTGCGGAGG AGGAGGAGGG GATAGTGAAG AGGTTGAAAA 
550
CGAAGTTCAC GGCGGAGCAA ACGGAGAAAA TGAGGGATTA TGCGGAGAAG 
600
CTTCGGTGGA AGGTGAGACC TGAGAGGCAG GAGGAGGTTG AAGAGTTTTG 
650
TGTAGAGATT GGAGTGAATC GGAAGAATTT TAGGATTTGG ATGAATAATC 
700
ACAAGGATAA AATTATAATT GATGAATGA
750

>AT5G42780.1 longest ORF length:242
MDEIKPKKEE NSKRRRNVKP ICRETGDHVH YLPTCKTKPK PTRTHHAPPP 
50
ILDSIFKVTH KPHYYECRKN HAADIGTTAY DGCGEFVSST GEEDSLNCAA 
100
CGCHRNFHRE ELIPENGGVT ETVLEVLKIS SCQFRRIFCS PYGGGKSEGK 
150
KKKKEKESYG GDPIIKDRFG GAEEEEGIVK RLKTKFTAEQ TEKMRDYAEK 
200
LRWKVRPERQ EEVEEFCVEI GVNRKNFRIW MNNHKDKIII DE
250