fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G42780 ATHB27, ZHD13 ZINC FINGER HOMEODOMAIN 13, homeobox protein 27 (.1)

>AT5G42780.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, KpnI, NotI, PacI, SacI, SmaI
Name Recognition sequence Cut positions
BamHI G|GATCC 172, 2460, 4547
BglII A|GATCT 3109
EcoRI G|AATTC 4094
EcoRV GAT|ATC 2269, 4284
HindIII A|AGCTT 213, 2558, 4662, 5250, 5787
HpaI GTT|AAC 458
NcoI C|CATGG 862
NdeI CA|TATG 6116
NheI G|CTAGC 2584
PstI CTGCA|G 415, 1444
PvuII CAG|CTG 3085
SalI G|TCGAC 2494
SpeI A|CTAGT 454, 2013, 3679, 3949, 5725
StyI C|C[AT][AT]GG 862, 2935
XbaI T|CTAGA 322, 5372
XhoI C|TCGAG 1272, 2822


Click here to view TAIR data

>AT5G42780 genomic sequence (4065-4793,) length:6481
GACctgcgat ataaagtaag tgcaaaatca acaaacaaga accataaatc 
50
acagcatttg catcacattt ctataattca acaaccaatt tcattacaca 
100
tttcaataga gagtcacact agcacatacC TAACAAGATC ATCAAGTATA 
150
TTCTCTGCTT CTAATTTAAC TGGATCCTTA TCATCAAGTA ATGAAGCAGC 
200
ATTCTTCACA ACAAGCTTAA ATGTACAAAC ctaatcaaca acatcatcat 
250
catcatcata aaaatcaaaa ctttaatgtc attcataact aaaacccaaa 
300
actttaagat caatttaaga ttctagaaac CTCAACTCCG GATTTAGATT 
350
GAAAATCAAC AAGAGAGCTT CTTTCTTTAG GAACACAATC TCTTGCAGAA 
400
GACTTAAACA GATTCTGCAG ATTCTCCAAA TCTTTCTCTG TATAATCAGA 
450
TTCACTAGTT AACGAAAGAT AAGCAGATTG AAGAGCTTGA CGAGTTGCAT 
500
CAATGGGAGC AAGTAAGAAT CTTGAAGACT TCTTCTTCTG ATCTTTAAGC 
550
CACTCTTTAG GTCCTGctgt gtgagaaaat tagttttttt ttcaaaattc 
600
acaaatttgg agataagatc aataaaatga agagtgagtg agaagtgtgt 
650
tgtgtacAGA TTCCTAAGGA GAAGGCGAAA GCGGGATTGG TGGGGGAGAG 
700
AGTGAGGAGA AGAGAAGTGG CGGAGGAGAG AAGAACGGTG GCGTCTCGGC 
750
GAGAGATAAT CTGTGGCAGG TGGTCGGAGA TTTGTGCGGC GGCGATTGGT 
800
GGTGGTGGTG GAGGTTTAGT GTTTGAAGAG AAGAAAGGTT GAGAAATTGG 
850
GATAAGACGA GCCATggctt aacattaacg agctaagtta tgtgtacccg 
900
ctcatgtggt atttaccaat ggtttccttt ttgaacagat ttttgtcttg 
950
tttttaaaca caaaacgacg tcggtttgtg aacataataa aaatgtaaat 
1000
gttgacttat ctttgctaaa ttggtccgtc agctaaggat gtaccttatt 
1050
tagcaaaatt aacgaaaatt aacgatttaa ttgaaaatca actaaagttt 
1100
aaaattaaag tcatcctact caaaattggt gctttgtttc accacttttg 
1150
ataaactggt gatggttttt atgacatttt ttccagtaat aaaaggggta 
1200
gttatgcaat ttagtagaag ttaaagggtt tctaaacaaa cttaaaaacc 
1250
aaatttttct ttattgcttt gctcgagagt gcctgcaact gcaacagttg 
1300
agattttgag cgtgtcaagg attctgattg ataacgatat tcaagttcag 
1350
caatctcatt gcagtagaaa ATGGAATCGA ATCATCCTCA CTTCAAGgtc 
1400
cgcttctttt caataggttt ctagttcgat tcatgaactg tttctgcagt 
1450
caatttcgaa cttgtgaaat ctccataact tgtgctttga atgtatttgc 
1500
taaagctata atcttgttgc gtttcaaaaa ccatcctttg gaaaaattgg 
1550
agtcttttgg ttgcttattg aaatttgttt gcagCTAATT TTGGGATCTT 
1600
CTTCGATTGC TCGACGTAAG ATACTAACAG ATATGGGATA CCAATTCACT 
1650
CTCATGgtaa tttcttgttc ctttgaaatt attattcaaa gactgcattt 
1700
ttgtatttgg gcttctagtt caagtagaag tttactggta attgttaatg 
1750
tagAGTGCTG ATATTGATGA GAAAAGCATC CGCAAGGAGA AACCTGAAGA 
1800
GTTGGTTTTG GCTTTAGCTG AGGCAAAGgt aacttcatta gtcatctgca 
1850
ataaaatggt tgcttttatg gttcatgttt ctttttgtta atcttgtcat 
1900
cacaggctga tgctattgtg tcaaaactac aaattagtga atgtgaagat 
1950
gaggaacaac cgagagtctt gattgcatcg gatacagtat gtagtttttg 
2000
gtttagctaa ttactagtaa agtctccatc tactatcacc aagttccatt 
2050
ttatgttctt gggaatgcat catcatcttc tttggaaata tacactctta 
2100
cgtcgtaata gctctgattt gtcctgcacc agaagttgct ttatgggttt 
2150
tatctcttta gggtcctcta tatcttactc tgaagctagt atttgtcatt 
2200
ctttaggtct tgatctactc ttgtttattc tgtgaaattt aagtctttat 
2250
gctctgccta catgatttga tatcgcatgt tttgtagctc cgcctacaat 
2300
tatcatttct gcttccacca gtgtttttat taactggagg gacctgtttc 
2350
atgcatatat cttttattaa gccaaaggtg ttttatatag catttgctct 
2400
tcatcagtct cattgataaa ccggcataat tttttcccag GCTGAAGCAA 
2450
TCATGCAGCG GATCCCTGAT GGTGAAAACA TAGAGGAGGA TAAGTCGACC 
2500
TTACTTATTA CTTGTGACCA Agtactgagc tatatttaaa ctttctgtgt 
2550
ttgctcaaag ctttactatg atattatcaa ctagctagct gtaatggaca 
2600
cccatgttag gttaggttag tgattaaatg gagtctaaag agctaagatt 
2650
gtttaaacat tcaggttgtt tgtaatttat aggagttgac taatgaaaga 
2700
tggggcattc taaggacaga aatggaattt ggtgataata gatagtctat 
2750
gagagacttg ggtttaatgt tttgaattgt atgaagGTGG TTGTCTATGA 
2800
AGATGCTGTT AGAGAGAAAC CCTCGAGTGT CGAAGAAGCA AGGGAGTACA 
2850
TAAGAGgtaa gctcacatga tttgttttgc ttactataac tcaaggctta 
2900
aggttaaaga actaaattca aaacacagGC TATTCCAAGG GGCATACAGC 
2950
AACAGTGAGT TCTGTGGCTG TGACAAATCT CAAAACAGGA GTCAGAAAAG 
3000
GAGGCGTCGA TAGAGTGGAG gtaacactat aatcttgcgt ttcattaaag 
3050
ttaggattgt tacaatttgg gaaatatata gcatcagctg atgatgtaaa 
3100
ttcctaacag ATCTATTTCA ATGAAATACC GGAAGAGACT ATCGAGAAAC 
3150
TGgtgagtgg tgttttgtac aagtttaaga catatatttc accatatcaa 
3200
tattgaagtt aaggctgtgt tgatgagcag ATTGAGGAAG GCATGGTGCT 
3250
TAAGGTGGCT GGTGCACTCC TAATCGAGCA TCCGCTAATC TTGCCATGCG 
3300
TTAAGGAAGT Ggttggattc cttaccttgt ccattttaaa atatgaacca 
3350
ttatatgaat ttacaaggat ttaagtctat atagtctatc ccttcttctt 
3400
catagataca catgttgatc atacggtttc gttcctcttg ttcttttaat 
3450
accgttttgg agcatgggat gttaaactag gttgtattgt tgtatcagGT 
3500
TGGGACAACA GATAGTGTGA TGGGTCTGCC CAAAGAATTG ACTGAGAAAC 
3550
TGATAAAGGA AGTATTGGCA AGCACATAGg tacattcgtc gcctctgaat 
3600
gttggtgtat tcatgttgtg aggattatag ataagtttcg gagtttaatt 
3650
tgggaaatga gcttaatgtt acagtcaaac tagtttattc agttgtttta 
3700
ctacctcttg tttctgactt aacctttaga ctggaattgg taattgatag 
3750
cgtgatatta gagaggctta ccatcaaaac cacccaaacc gaagtaaacc 
3800
aaaccggctg aacctaagtt taagtaaata aggtttgtgt tggacttacg 
3850
gtctcttggt ttggtttggt agcccctaac caattggtta cgtaatttat 
3900
ttccggttaa acacaagttt tgttggaaaa cggaaactgt gactggtcac 
3950
tagtcactat caagcagcct aaaaagtatc gactcttctt tatcaaaaaa 
4000
gtttacacaa acactttctc tccactgaac tcattttctc tcttcttctt 
4050
catcatcatc atcaATGGAT GAGATAAAAC CAAAGAAAGA AGAGAATTCC 
4100
AAACGACGTC GTAACGTCAA ACCCATTTGC CGTGAAACTG GAGACCACGT 
4150
CCATTATCTT CCAACATGCA AAACCAAGCC CAAACCCACG CGTACTCATC 
4200
ACGCGCCACC ACCGATCCTC GACTCAATCT TCAAAGTCAC TCACAAGCCA 
4250
CACTACTACG AATGCAGGAA GAATCACGCC GCTGATATCG GAACCACCGC 
4300
TTACGACGGC TGCGGCGAGT TTGTTAGCTC CACCGGTGAA GAAGATTCTT 
4350
TAAACTGCGC CGCATGTGGC TGTCACCGTA ACTTCCACCG TGAAGAGTTA 
4400
ATCCCGGAGA ACGGCGGCGT TACTGAGACG GTTCTTGAAG TTCTCAAGAT 
4450
TTCATCGTGT CAGTTTCGTC GGATCTTTTG CTCACCTTAC GGCGGTGGAA 
4500
AAAGCGAAGG AAAGAAGAAG AAGAAGGAGA AGGAGAGTTA TGGAGGGGAT 
4550
CCGATAATTA AAGATCGATT CGGCGGTGCG GAGGAGGAGG AGGGGATAGT 
4600
GAAGAGGTTG AAAACGAAGT TCACGGCGGA GCAAACGGAG AAAATGAGGG 
4650
ATTATGCGGA GAAGCTTCGG TGGAAGGTGA GACCTGAGAG GCAGGAGGAG 
4700
GTTGAAGAGT TTTGTGTAGA GATTGGAGTG AATCGGAAGA ATTTTAGGAT 
4750
TTGGATGAAT AATCACAAGG ATAAAATTAT AATTGATGAA TGAttattta 
4800
ccaaacttaa ttgtgttact tttcttttca ttctactttg ttttaatttg 
4850
tgtttgattt agtgtaatgt ataaataaca agctcattat tggctaaaac 
4900
caattgtgga gaaggatttg ccacaacctt cgtaatcaat agttttaatg 
4950
caagaagtaa gtaatatttc gtttggattt ctgatctgct gtgctcatta 
5000
cttgtaagtt ggcccaaccc aaaatgtgaa tggtcaagaa catgaacatg 
5050
acaaggttct taaaacacaa tattacaaga aagaacacca actatgaaag 
5100
cagaccccaa ctacacgttt cttataccaa aaaactgact tggccttcat 
5150
ttcctacata aatcttactt gttctttaag tcctgcactg agtgatagag 
5200
ccttgagagg gtttacctag agaagcctac aatatggaat ttggactcca 
5250
agcttgtgca aatttgaacg cttgctttaa acataaatat gttttgtcta 
5300
aatgatttat ctcgattttt tgcactatta tgcgaaaaag accgttagtt 
5350
gcgttccttt tttttttttt ttctagattt aggtttataa tagtagattg 
5400
tttaatttct taactcactt actattttaa cttgcatgtg tttattcaac 
5450
catcttgttt ttgttcgcaa cacgtagttt agtttcagtt atcttaagta 
5500
ctgtcattca tatttagtct tgagaatatc aacaaaaact aaacgattct 
5550
tagcttagtt catatctcat atctttggtg tgtgacattc ttaatattta 
5600
atcatcgacc ttgttattac gaccaccttc cttcacttta ctctttcgat 
5650
taagtaataa aaattcggac acaacatcta tagtggactt catccagatt 
5700
agtcttgaag atttacacgg ccgcactagt accagagcaa aattgatgaa 
5750
catatcgcta caaccggaat agtaggcaac ccttttaagc tttaccgctt 
5800
catctaatca tcttccacct atgtagatgt cctcacattg agatgacaaa 
5850
gttgtatgga gatatatact cttatacgag gacatcctct acaaagttgt 
5900
atgaagaata caccaaacaa tcgaaagttt gttaagagtt tatctaccga 
5950
ttctgtcttt ttctttcttc accaactctt gattgtatgt gaatgttaaa 
6000
tgaattatag actaattatt ttttattcta tttttctaac tacaaaaata 
6050
gaaatcataa cgcaaaaaga aaaagtttct taccattggc ctttgccaaa 
6100
aggatgcgaa ttttacatat gtacaagaag tcatcaagaa ctgctattcc 
6150
ataattatga ttaattaggt ttcatagaat aagtaaaaaa tatatatctg 
6200
agtcattatg aacacttact tgatcaaaga ggacaattta gataatcgcc 
6250
gaaataaaaa aagaaagaaa gaaagaaata attcctttaa gaTCATCGCA 
6300
ATCTCATGGG ATGTGCCCGT TTAGCGACTA ATCCTTCTTG TTGTTTTATC 
6350
CGCAAGGAAG ATAGTGAAGG CATAACATGG TTATCTTCAG GCGTTGGCGC 
6400
CATTGACGGC TCCATCATCA ACTTCTCTTC TTCTACGTGA CTAACAAACT 
6450
CTTGTGCCAA ATGCATTTCT TCTGAATATC C
6500