fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G43175 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G43175.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 225, 591
HindIII A|AGCTT 11
PstI CTGCA|G 559
SalI G|TCGAC 211
StyI C|C[AT][AT]GG 238


Click here to view TAIR data

>AT5G43175.1 length:672
ATGGAGAATG AAGCTTTTGT AGATGGTGAA TTGGAGTCTC TTTTGGGGAT 
50
GTTCAACTTT GATCAATGTT CATCTAACGA ATCGAGCTTT TGCAATGCTC 
100
CAAATGAGAC TGATGTTTTC TCTTCTGATG ATTTCTTCCC ATTTGGTACA 
150
ATTCTGCAAA GTAACTATGC GGCCGTTCTT GATGGTTCCA ACCACCAAAC 
200
GAACCGAAAT GTCGACTCAA GACAAGATCT GTTGAAACCA AGGAAGAAGC 
250
AAAAGTTAAG CTCGGAAAGC AATTTGGTTA CCGAGCCTAA GACTGCTTGG 
300
AGAGATGGTC AAAGCCTAAG CAGTTATAAT AGTTCAGATG ATGAAAAGGC 
350
TTTAGGTTTA GTGTCTAATA CATCAAAAAG CCTAAAACGC AAAGCGAAAG 
400
CCAACAGAGG GATAGCTTCC GATCCTCAGA GCCTATACGC TAGGAAACGA 
450
AGAGAAAGGA TAAACGATAG GCTAAAGACA TTGCAGAGCC TAGTTCCTAA 
500
TGGGACAAAG GTCGATATAA GCACAATGCT GGAAGATGCT GTCCATTACG 
550
TGAAGTTCCT GCAGCTTCAA ATCAAGCTCT TGAGTTCAGA AGATCTATGG 
600
ATGTATGCAC CTCTTGCTCA CAATGGTCTG AATATGGGAC TACATCACAA 
650
TCTTTTGTCT CGGCTTATTT AA
700

>AT5G43175.1 longest ORF length:223
MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNETDVF SSDDFFPFGT 
50
ILQSNYAAVL DGSNHQTNRN VDSRQDLLKP RKKQKLSSES NLVTEPKTAW 
100
RDGQSLSSYN SSDDEKALGL VSNTSKSLKR KAKANRGIAS DPQSLYARKR 
150
RERINDRLKT LQSLVPNGTK VDISTMLEDA VHYVKFLQLQ IKLLSSEDLW 
200
MYAPLAHNGL NMGLHHNLLS RLI
250