Locus |
Common name |
Short description |
AT5G43175 |
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT5G43175.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BglII
| A|GATCT |
225, 591 |
HindIII
| A|AGCTT |
11 |
PstI
| CTGCA|G |
559 |
SalI
| G|TCGAC |
211 |
StyI
| C|C[AT][AT]GG |
238 |
Click here to view TAIR data
>AT5G43175.1 length:672
ATGGAGAATG AAGCTTTTGT AGATGGTGAA TTGGAGTCTC TTTTGGGGAT | 50 |
GTTCAACTTT GATCAATGTT CATCTAACGA ATCGAGCTTT TGCAATGCTC | 100 |
CAAATGAGAC TGATGTTTTC TCTTCTGATG ATTTCTTCCC ATTTGGTACA | 150 |
ATTCTGCAAA GTAACTATGC GGCCGTTCTT GATGGTTCCA ACCACCAAAC | 200 |
GAACCGAAAT GTCGACTCAA GACAAGATCT GTTGAAACCA AGGAAGAAGC | 250 |
AAAAGTTAAG CTCGGAAAGC AATTTGGTTA CCGAGCCTAA GACTGCTTGG | 300 |
AGAGATGGTC AAAGCCTAAG CAGTTATAAT AGTTCAGATG ATGAAAAGGC | 350 |
TTTAGGTTTA GTGTCTAATA CATCAAAAAG CCTAAAACGC AAAGCGAAAG | 400 |
CCAACAGAGG GATAGCTTCC GATCCTCAGA GCCTATACGC TAGGAAACGA | 450 |
AGAGAAAGGA TAAACGATAG GCTAAAGACA TTGCAGAGCC TAGTTCCTAA | 500 |
TGGGACAAAG GTCGATATAA GCACAATGCT GGAAGATGCT GTCCATTACG | 550 |
TGAAGTTCCT GCAGCTTCAA ATCAAGCTCT TGAGTTCAGA AGATCTATGG | 600 |
ATGTATGCAC CTCTTGCTCA CAATGGTCTG AATATGGGAC TACATCACAA | 650 |
TCTTTTGTCT CGGCTTATTT AA | 700 |
>AT5G43175.1 longest ORF length:223
MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNETDVF SSDDFFPFGT | 50 |
ILQSNYAAVL DGSNHQTNRN VDSRQDLLKP RKKQKLSSES NLVTEPKTAW | 100 |
RDGQSLSSYN SSDDEKALGL VSNTSKSLKR KAKANRGIAS DPQSLYARKR | 150 |
RERINDRLKT LQSLVPNGTK VDISTMLEDA VHYVKFLQLQ IKLLSSEDLW | 200 |
MYAPLAHNGL NMGLHHNLLS RLI | 250 |
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