fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G43175 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G43175.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, KpnI, NcoI, NheI, NotI, PvuII, SacI, SmaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1467
BglII A|GATCT 1403, 2573, 2982, 5032
EcoRI G|AATTC 3470
EcoRV GAT|ATC 5362, 6520
HindIII A|AGCTT 71, 4086, 4150
HpaI GTT|AAC 628
NdeI CA|TATG 270, 2741
PacI TTAAT|TAA 2519
PstI CTGCA|G 488, 4863
SalI G|TCGAC 4350
SpeI A|CTAGT 1834
StyI C|C[AT][AT]GG 432, 4455
XbaI T|CTAGA 12, 2260


Click here to view TAIR data

>AT5G43175 genomic sequence (4140-4364,4443-4661,4749-4880,5018-5113,) length:6613
tagATGGGAC ATCTAGAAGA GTGGTTGGTT ATTGATCGGA ATTATATGGG 
50
TTCTTTGGTA GGAGCTGCTG AAGCTTTGAA AGGCAGCACC CTTTGTCTAC 
100
CTGTTGATTG CGGGGCAATG gtttggctat tctactcaaa ttatttttta 
150
gttatgtgtt gggaaagcat gtgatccttg ctgatgatca tgttatcgca 
200
gGTAAATGTA CAAAGTGTTA AGGATGCCAT TTGTTCAGCA GTTGATGTTA 
250
TGCAAGCAAT GGCATCTTCC ATATGCTTGT TGCTGCCAAA Ggtgactctt 
300
cttttctctc ggataatgtt tatggcacaa tcttctattg cgttttattc 
350
atattgtatc ttcaaagtga aagccaatat cccagGTTGG GAAAATAAGT 
400
AGCTTGGCAG CAGAACTTGG CCGTGTGAAT GCCAAGGACG AAGGGATGCT 
450
CGACGTGTGC CGGGACCTTC TAAACACAAT CTCAGCTCTG CAGgtacaat 
500
atctcaaatt cattatagat ttgtctgcac tatacctaca gtgttgggga 
550
ttaatctcta aactatgcag GTAACAGAAT GCAGTTTGAG GACACAGGTT 
600
ACACAGCTAC AATAGtaagg tggcaaagtt aacaaaacag agtgtaagta 
650
agaaagctac tcattatcgg caattttgga gttatgagaa tgtaaggaga 
700
tcatctaatt caaatagaga ggccaaattc acttgatagt ttaacaacca 
750
aacaaaagtc agttgtaaat attttcgatt cggttttcta atgaatttag 
800
tatgctgtta cttcagaaac aaaggaattg aatcgtattg tgtattggta 
850
atagaatcaa caaaactgtt ccttgaaatt gaaatttgat atttacattt 
900
gataaacttc caggtcttca acaaagacTT ACTTCAGGCG AGGCTTCTTA 
950
GTCGCCATCG GACTCATCAC TTCGTCGTCC GGCGAAAATC CCTGCACCGG 
1000
TATAATATTA AGGTCAAATC CACGGTGGCT ACTACTGCTG ACGTGGCTAG 
1050
TAGACCCCAC ACCTTCCGAG TTCGAAACGC CACCATCGTA GTGGCACCGC 
1100
TTGTGGCCGC CGAGAGCTTG ACCGGTGGCG AAAGATTTCC CGCAAACCGA 
1150
ACAAACGTGA GATTTCACGG CGGTGGATGG TGTCGATTTA TCATTCTCTC 
1200
CACCACCGTA TAAGCTCCGG TGGCTCGCTT TATGACCGCC GAGAGCTTGG 
1250
TAAGACGAAA ACGTCTTGTA ACAAACGCCA CACTTATAAC TCGGCTTCTC 
1300
CGCAACCGTC ACAGAGTCAA GATCGCCGCC ATCCCGAGCA AGAAGCATGA 
1350
GACAGAAAGC TAGATACTCT TCCTCAGTGA GACGGTGGTT ATGATGAAGA 
1400
TCAGATCTCG AACGTTTGGA TCGTTTCTTA CATTTGGTCC ACTGCTCAAC 
1450
GCCATTGAAT CTTAAGGGAT CCTCGACCAA TCTTGGTGAA TTAAGAGCTT 
1500
CAAGCGCCAT tgctatagaa aatttaaaac ctaatttgag agcagagaga 
1550
tatatagaag aaggtgaagt atggagaaga atcttgagaa gagaggaagt 
1600
tgcgtgagaa agaagagtga gagtgggtgg ccaaattggc cattctaatt 
1650
attttaagta tttagttgaa acgaaatatg tgctgagcaa gttgtttgtt 
1700
gtaagttgta acgaaagtga atgtataatt aaaatattat ttcaacattt 
1750
ggtgagagtg gaatatatta attttggcac gttttgtggg ggagagaaat 
1800
gttacacaag tcgggctata tactcttctt ctgactagtt gagagttgac 
1850
atttgaatcc aactacacac aataatgatt gattctttaa aactaataaa 
1900
aaccttgtct ctaaacttag gccgtatttt acaattaata ttcatctagc 
1950
ttttcattta tgttttaaca ctttgcttat atatgtagtt atttatttaa 
2000
gtgtaggttt gttgtacctt tgggaatttc tgaacaaacc caatagcatt 
2050
cattacttgg tccaaacatt tgaaaacgga ggcaatgtgt gtagattaag 
2100
attataatga ggaaaccttg aatataaaag atgattggat gtttcggtag 
2150
agaactcatg acaacaagaa acaaagagct tataacttaa ttcccacagc 
2200
ccattgcaac caagaatcat gaaattttct ttattggttt taattcaaat 
2250
gcgtgaatgt ctagagttga agttacacta aattggattc aacaacttgt 
2300
gtcatgatac ggtataagag ttttggttta atggtcttct ctttagtata 
2350
aggttttggg acttttcttt taaagttagg attatgggtg cttttttcac 
2400
gtttaggtta gaatctaagt tgtatcattt ttactagcta tttacgttat 
2450
aatatagatt gtataattac ttatataatt aggtctttat gctaactaaa 
2500
aaataatttc caacaattaa ttaacctaat tctctaagag taacctatct 
2550
ctctctcttt tctcacatta cgagatctaa aagacacatc atgttagatg 
2600
cctaaaaacg aaaagcctaa tgaagtgtaa tgattcttag gcttgctgca 
2650
actaacgagt ttaagacaag ctaccgaagc agatatacca gcaaagtttg 
2700
gtggcctgag caacgatgac cttcgtaaac tcttgaaaaa catatgggtc 
2750
atgcatgtgc tttcacgaat ataatgtgtg catatatctc taaaccttta 
2800
gtttttcctt tcacaagcgg aagggggacc ttttgggtta tgttgcaatg 
2850
ggagaatcgt cggtaacaga ttatgcatgg ttgaatcatc aatagcttaa 
2900
caacatctag tataaacttg tgtgtaatct ttagaaagaa aaaactttat 
2950
aattaatcta gtaacgggat gttgaaaaaa tagatctaac aaccaatgaa 
3000
tagctaatcg gtgagattaa tgcattgtac cttaactcaa acttagagac 
3050
aagaatacat ttccgagctg tgtttctttg tttttattat ggacaatgac 
3100
ttttgactta ttaaatttta tctgtctctg taagggtgat cttaagacaa 
3150
gcaaacgagt gtgaatctga tcttgtcgga atctcaaatt attccgtgcc 
3200
gtcctttggt cttctactat tactttgttc attatctttt aacaatatgt 
3250
attataggaa tttgaatcaa gctaattaga caacgaccac attagcatgc 
3300
agatacatat tctagtcacg agtaaattgt tgtttagact aaaaagtagc 
3350
tcgtctatat tgtttatcat catctttaat tacgtattca attcttattg 
3400
ggttaattag attcgatttg tagttagaat atttttttaa aaaattagtt 
3450
agtaaaaatg ttgggttgtg aattcacttt ttttggactc gctatgtgat 
3500
ccgacactcg gacattaacg ataatatcta catgtctaca gtttaattag 
3550
tttaagcgaa tcgtgaattt ttttcttatt ggatggatcg acactccgaa 
3600
ccccaacgta agatcatcca tgttttgcgg aaaaagagaa attattcaca 
3650
tctggattat agtatttcat tgactattta ttttcccaaa cgttagaaaa 
3700
ctaacaaaac aagttcattg tcacaggaca tttttgtaca taacgtgcat 
3750
tgggggcgcc ccatatattc tttctttact ctatttgtga ttgtgtgtac 
3800
attaaaatgt ttaacattca ttgaaaaaca tgaatccttc tatatatata 
3850
tagaatatac taacattaat gtactcgtca tgcaatggag tggcataacc 
3900
tctttgactc tgtctaaact tggcttttac cgaccccaca agttgactaa 
3950
tcgtagttga gcatggtagg ttaagaacat taagacttgt tcaagataca 
4000
atgagatttt aaaaccctga ttttataatc agccatcaaa tatttatatt 
4050
ccttctcaaa gttattctcc tcatgtctct aatataagct tgaacgttgc 
4100
tatatataaa tgtaaaggcg aacgcataag aaaagaaaaA TGGAGAATGA 
4150
AGCTTTTGTA GATGGTGAAT TGGAGTCTCT TTTGGGGATG TTCAACTTTG 
4200
ATCAATGTTC ATCTAACGAA TCGAGCTTTT GCAATGCTCC AAATGAGACT 
4250
GATGTTTTCT CTTCTGATGA TTTCTTCCCA TTTGGTACAA TTCTGCAAAG 
4300
TAACTATGCG GCCGTTCTTG ATGGTTCCAA CCACCAAACG AACCGAAATG 
4350
TCGACTCAAG ACAAgtaagt ttaagtaaaa aatgttaagt ttcctatgtt 
4400
tacatttgtc gaatattaac ccataacggt aatgcaaagc agGATCTGTT 
4450
GAAACCAAGG AAGAAGCAAA AGTTAAGCTC GGAAAGCAAT TTGGTTACCG 
4500
AGCCTAAGAC TGCTTGGAGA GATGGTCAAA GCCTAAGCAG TTATAATAGT 
4550
TCAGATGATG AAAAGGCTTT AGGTTTAGTG TCTAATACAT CAAAAAGCCT 
4600
AAAACGCAAA GCGAAAGCCA ACAGAGGGAT AGCTTCCGAT CCTCAGAGCC 
4650
TATACGCTAG Ggtaattcaa gataacctaa acaaatattt tcattgttga 
4700
tttgagtttt taggttttgt ggaataataa tgttgatgaa tgttgcagAA 
4750
ACGAAGAGAA AGGATAAACG ATAGGCTAAA GACATTGCAG AGCCTAGTTC 
4800
CTAATGGGAC AAAGGTCGAT ATAAGCACAA TGCTGGAAGA TGCTGTCCAT 
4850
TACGTGAAGT TCCTGCAGCT TCAAATCAAG gtaacgactt tttttcttgt 
4900
tggagtattg atcgtttctt gtactgcaag aaaccatgta aaactcttac 
4950
ctaaactctg ttttaccatt tttcctaacc aaacactttt gtcgtttttg 
5000
gaaattttgc aatgtagCTC TTGAGTTCAG AAGATCTATG GATGTATGCA 
5050
CCTCTTGCTC ACAATGGTCT GAATATGGGA CTACATCACA ATCTTTTGTC 
5100
TCGGCTTATT TAAgacaaaa tcattggaat aacataactt acagtacttg 
5150
ttttttttct cgttctatat tcatgattat ggttattttt tgtttgagtt 
5200
gttcaatttt tctgtctatt gcgttctatg aacttgacac tctttttgta 
5250
attattatat gctaaagaca atttggacta acagcatttt aattttaatc 
5300
ttcttttaag atgtacctga aagtcataaa tattatttta aggactacca 
5350
atatttattt agatatcaat tcaatatcgt acgtactaga tgtgtttatt 
5400
taatttcata aatattagag gtacttttca gattttattt cggaagctag 
5450
tttttaacat aattaccgtt gtatacataa ttaaaaggcg agttagaatt 
5500
tatgaatacg aatatttgtg agtgcatgcg cagtctctgc gaaggggatc 
5550
ggacgtgcta atgttttatg catttatcca atattatctt agatgttttc 
5600
agaaggacat gaacaagaat caaataatcg aaccgtgtct tgtgaagcat 
5650
atatgagaat atattctcag tttaggaata tattagatgt cactttcttg 
5700
tgattttatt gcatcccatg cactgttttt atttcctacc acctaatcag 
5750
atagtgttgt ctttaatgaa atgcacgatt tatatgtgca tatacaatat 
5800
cttatttaga ggtagaccat aaaattagaa ccctaaatta tgataaattt 
5850
gtaaatttat ttactttaca taaacatacc atgtagaact tgaccaaata 
5900
tataatatat accgtgtcga accaacagac tggtggtaat tactgatttg 
5950
cataagccat gcaaagtgtg aatgcaagaa ttatcatata tgccaaaaat 
6000
ttaaaccaga aaacaaaaag ccgaaaatta cgaaatatgc atttaaaagt 
6050
tttaatcgtt atacaatact ttgttttaaa gtaaattaat catttgggta 
6100
taaatctgaa atcatggctt gcgaccatgc aaaattaaca taaacaatga 
6150
atattccaaa tagtagaaac gaatgttgaa gttgagaact tgtcaacaaa 
6200
taaaactatt ttgtatcgtt caaactcttt gttcatttcc attcgttatt 
6250
atatataatg aatgaaaaca ataatcaacc tgttattttc aatatctctc 
6300
tctCTATGTT TTACAAACAG AAATTTTAGC GGTTGACGGA AAATCAAACT 
6350
GATACAACAC CCAAACAAGG CCTAATGAAG ATGCGAGCAC CGGTAACGGT 
6400
CCAAACATCC AAAGCAACAA CGGTATAGAA ACACACATAA CTCTGTTCCC 
6450
AACCATAGCC ATAAAAAACC CTCTCTCCAA CACCAATCTT GTATACTCCC 
6500
TAAACGAACT TGTCCCCGTG ATATCATAAG CGCAGTCACA GTCTCCTTCA 
6550
TGCTTTTTAG CTATTGCGTT GATAAGGAAA ATTGCATCCA TTAAATAACT 
6600
CAAGGCAATT GAG
6650