|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G43410 | Integrase-type DNA-binding superfamily protein (.1) |
>AT5G43410.1 genomic map
>>Show CDS map
Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BssHII, BssSI, BstAPI, Bsu36I, Cfr10I, DraIII, DrdI, EagI, EarI, EciI, EcoRI, FauI, FokI, FseI, HaeII, HgaI, HindIII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PleI, PmeI, PshAI, PspOMI, PstI, PvuI, PvuII, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SphI, StuI, TliI, Tth111I, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 239, 1772, 1872, 3899 |
| AccII(FnuDII) | CG|CG | 676 |
| AciI | C|CGC | 675, 3156, 4252, 4273, 4279, 4285 |
| AclI | AA|CGTT | 3462, 4129 |
| AflII | C|TTAAG | 5393 |
| AflIII | A|CPuPyGT | 96, 1570, 2075, 2183, 2355, 3872, 3895, 4114, 5318, 5690, 5806 |
| AhdI | GACNNN|NNGTC | 4540 |
| AluI | AG|CT | 1109, 2654, 3287, 3508, 4169, 4348, 5042, 5264, 5661 |
| ApoI | Pu|AATTPy | 61, 165, 277, 722, 750, 1053, 1735, 1755, 1821, 1859, 1907, 1934, 2565, 2672, 2756, 2840, 2848, 3039, 3362, 3688, 3712, 3733, 3845, 4316, 5583, 5619, 5757, 5768, 5794 |
| AseI | AT|TAAT | 914, 986, 1331, 1384, 1406, 1696, 1763, 2586, 3012, 3993, 5424 |
| AvaI | C|PyCGPuG | 3536, 5832 |
| AvaII | G|G[AT]CC | 12, 251, 2308, 3059, 3086, 3818 |
| BalI | TGG|CCA | 3435 |
| BanI | G|GPyPuCC | 4025 |
| BanII | GPuGCPy|C | 2411, 4349, 5662 |
| BclI | T|GATCA | 566, 846, 4489, 4645 |
| BfaI | C|TAG | 592, 659, 1867, 2725, 2766, 4153, 4300, 4949, 4981, 5019, 5040, 5044, 5309 |
| BglII | A|GATCT | 1577, 3740 |
| BsaAI | PyAC|GTPu | 97, 192, 1441, 1779, 2356 |
| BsaHI | GPu|CGPyC | 2119 |
| BsaJI | C|CNNGG | 2312, 3102, 3536, 4045, 4064, 4257 |
| BsiEI | CGPuPy|CG | 4530 |
| BsiHKAI | G[AT]GC[AT]|C | 4349, 5662, 5829 |
| BslI | CCNNNNN|NNGG | 439, 2114, 2137, 3536, 3803, 4378, 4538, 5546, 5570 |
| BsoBI | C|PyCGPuG | 3536, 5832 |
| Bsp1286I | G[GAT]GC[CAT]|C | 2411, 4349, 5662, 5829 |
| BspDI | AT|CGAT | 1583 |
| BspHI | T|CATGA | 4216, 4409, 4492, 4639 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 4025 |
| BsrGI | T|GTACA | 56, 2591, 5687 |
| BsrI | ACTGGN| | 4536 |
| BssKI | |CCNGG | 3535, 4044, 5015, 5324 |
| BstBI | TT|CGAA | 1825 |
| BstEII | G|GTNACC | 350, 3642 |
| BstF5I | GGATGNN| | 837, 1718, 4331 |
| BstNI | CC|[AT]GG | 5324 |
| BstUI | CG|CG | 676 |
| BstXI | CCANNNNN|NTGG | 1459, 3302, 4257, 5623 |
| BstYI | Pu|GATCPy | 631, 1577, 3033, 3740, 4265 |
| BstZ17I | GTA|TAC | 1772 |
| BtgI | C|CPuPyGG | 3102, 4257 |
| BtrI | CAC|GTC | 3896 |
| BtsI | GCAGTGNN| | 337 |
| Cac8I | GCN|NGC | 679 |
| ClaI | AT|CGAT | 1583 |
| DdeI | C|TNAG | 1602, 2157, 2987, 3446, 3506, 3721, 5072, 5257 |
| DpnI | GA-CH3|TC | 565, 630, 845, 944, 1178, 1283, 1576, 1584, 2104, 2738, 3032, 3202, 3739, 4002, 4264, 4488, 4619, 4635, 4644, 4719, 5656 |
| DpnII | |GATC | 565, 630, 845, 944, 1178, 1283, 1576, 1584, 2104, 2738, 3032, 3202, 3739, 4002, 4264, 4488, 4619, 4635, 4644, 4719, 5656 |
| DraI | TTT|AAA | 198, 1676, 1731, 1738, 1931, 1937, 2260, 2835, 2852, 2916, 3691, 4786, 5205, 5753 |
| EaeI | Py|GGCCPu | 3435 |
| EcoNI | CCTNN|NNNAGG | 5570 |
| EcoO109I | PuG|GNCCPy | 252, 2764, 3060, 3819 |
| EcoRV | GAT|ATC | 728, 1089, 3197 |
| Fnu4HI | GC|NGC | 183, 2127, 4078, 4150, 4171, 4195 |
| FspI | TGC|GCA | 2360 |
| HaeIII | GG|CC | 1037, 2762, 3434, 3794, 4188 |
| HhaI | GCG|C | 2359 |
| HinP1I | G|CGC | 2359 |
| HincII | GTPy|PuAC | 239, 4852, 5164 |
| HinfI | G|ANTC | 408, 414, 512, 770, 875, 939, 2112, 2650, 3091, 3283, 3497, 3543, 3662, 3698, 4093, 4495, 4506, 5108, 5635 |
| HpaI | GTT|AAC | 5164 |
| HpaII | C|CGG | 3535, 4043, 5015 |
| Hpy188I | TCN|GA | 10, 411, 636, 942, 1574, 1817, 2115, 2736, 3188, 3200, 3339, 3500, 3546, 4053, 4622, 4633, 4722 |
| HpyCH4III | ACN|GT | 894, 927, 1188, 1542, 3117, 3176, 4106, 4814, 4848, 5061, 5410, 5547 |
| HpyCH4IV | A|CGT | 96, 122, 157, 191, 1229, 1440, 1778, 2183, 2355, 2450, 3461, 3895, 4112, 4128, 5725 |
| HpyCH4V | TG|CA | 272, 332, 530, 1324, 1455, 2079, 2547, 2803, 4076, 4474, 4664, 5135, 5565 |
| MboI | |GATC | 565, 630, 845, 944, 1178, 1283, 1576, 1584, 2104, 2738, 3032, 3202, 3739, 4002, 4264, 4488, 4619, 4635, 4644, 4719, 5656 |
| MfeI | C|AATTG | 1099, 3370 |
| MscI | TGG|CCA | 3435 |
| MseI | T|TAA | 115, 127, 197, 217, 475, 666, 913, 968, 985, 1074, 1233, 1301, 1306, 1330, 1377, 1383, 1387, 1405, 1413, 1513, 1656, 1670, 1675, 1695, 1730, 1737, 1762, 1891, 1930, 1936, 2215, 2259, 2487, 2525, 2537, 2585, 2658, 2681, 2834, 2851, 2860, 2915, 3011, 3351, 3631, 3690, 3735, 3992, 4204, 4544, 4785, 4825, 5093, 5163, 5195, 5204, 5248, 5392, 5423, 5681, 5752, 5796, 5811, 5879 |
| MslI | CAPyNN|NNPuTG | 465, 1562, 1648, 4256, 5469 |
| MspI | C|CGG | 3535, 4043, 5015 |
| MwoI | GCNNNNN|NNGC | 2127, 4147 |
| N.BstNBI | GAGTCNNNN|N | 3548 |
| NciI | CC|[CG]GG | 3535, 4044, 5015 |
| NcoI | C|CATGG | 4257 |
| NdeI | CA|TATG | 1213, 1504, 2083, 2595, 2611, 3560 |
| NlaIII | CATG| | 532, 1124, 1569, 1965, 2074, 3652, 3871, 4032, 4181, 4215, 4226, 4256, 4408, 4491, 4502, 4638, 4992, 5317, 5387, 5507, 5541, 5689, 5805 |
| NlaIV | GGN|NCC | 251, 3059, 3819, 4025 |
| NsiI | ATGCA|T | 531 |
| NspI | PuCATG|Py | 1570, 2075, 3872, 5318, 5388, 5690, 5806 |
| PacI | TTAAT|TAA | 1387 |
| PciI | A|CATGT | 1570, 2075, 3872, 5318, 5690, 5806 |
| PflMI | CCANNNN|NTGG | 439 |
| PmlI | CAC|GTG | 97, 2356 |
| PpuMI | PuG|G[AT]CCPy | 252, 3060, 3819 |
| PsiI | TTA|TAA | 740, 1852, 1996, 2504, 2975, 5403 |
| PspGI | |CC[AT]GG | 5324 |
| RsaI | GT|AC | 55, 583, 1063, 2086, 2161, 2590, 4040, 4322, 4816, 5686 |
| RsrII | CG|G[AT]CCG | 3087 |
| SacI | GAGCT|C | 4349, 5662 |
| SalI | G|TCGAC | 239 |
| Sau3AI | |GATC | 565, 630, 845, 944, 1178, 1283, 1576, 1584, 2104, 2738, 3032, 3202, 3739, 4002, 4264, 4488, 4619, 4635, 4644, 4719, 5656 |
| Sau96I | G|GNCC | 12, 251, 2308, 2763, 3059, 3086, 3794, 3818 |
| ScaI | AGT|ACT | 4323, 4817 |
| ScrFI | CC|NGG | 3535, 4044, 5015, 5324 |
| SfcI | C|TPuPyAG | 2425 |
| SmaI | CCC|GGG | 3536 |
| SmlI | C|TPyPuAG | 361, 3238, 4355, 5393 |
| SnaBI | TAC|GTA | 1441 |
| SpeI | A|CTAGT | 593, 1868 |
| SspI | AAT|ATT | 622, 711, 1346, 1368, 1436, 2920, 3025, 3800, 4780, 5189 |
| StyI | C|C[AT][AT]GG | 2312, 4064, 4257 |
| SwaI | ATTT|AAAT | 1739, 1938 |
| Taqƒ¿I | T|CGA | 238, 1582, 1824, 1976, 2051, 2605, 3789, 4013, 4095, 4132, 4497, 4527, 4555, 5097, 5658, 5800 |
| TfiI | G|A[AT]TC | 408, 414, 512, 770, 875, 939, 2650, 3283, 3497, 3662, 3698, 4093, 4495, 4506, 5108 |
| TseI | G|C[AT]GC | 2127, 4078, 4171, 4195 |
| Tsp45I | |GT[CG]AC | 349 |
| Tsp509I | |AATT | 60, 164, 219, 276, 574, 721, 749, 911, 915, 977, 1019, 1031, 1042, 1052, 1058, 1098, 1202, 1249, 1304, 1328, 1381, 1385, 1415, 1490, 1664, 1672, 1685, 1693, 1697, 1734, 1754, 1820, 1837, 1858, 1906, 1918, 1933, 2270, 2298, 2528, 2564, 2583, 2671, 2697, 2711, 2755, 2839, 2847, 2857, 2862, 2910, 2956, 2993, 3038, 3133, 3272, 3361, 3369, 3401, 3573, 3608, 3629, 3687, 3711, 3732, 3812, 3844, 4315, 4404, 4447, 4467, 4546, 4567, 4687, 4836, 4920, 5145, 5152, 5168, 5227, 5273, 5582, 5593, 5618, 5756, 5767, 5793 |
| TspRI | NNCA[CG]TGNN| | 337, 5413 |
| XcmI | CCANNNNN|NNNNTGG | 3637 |
| XmaI | C|CCGGG | 3536 |
| XmnI | GAANN|NNTTC | 1974 |
Click here to view TAIR data
>AT5G43410 genomic sequence (4001-4396,) length:5895
agacggctta tcggaccatt gaaaataaat gtttttggtg gtagaaatat | 50 |
ataaatgtac aaatttgatg ctttacataa aagaactctt ttagaacacg | 100 |
tgaaatcttt taccatttaa cttacgtttt aatagttttt caataatgaa | 150 |
aaaagtgaac gtagaaattt ctaaagtgtt taggcggcaa ccacgtattt | 200 |
aaagggttag atatgatttt aatttcataa aatcaccagt cgacctatgc | 250 |
gggacccaag acggctatac atttgcaaat tctgtttgtt attatatttg | 300 |
tttcggttcg tgaatgaaga ctgctataag agttgcagtg tatgttttgg | 350 |
tgaccccaat ctcaagatag cactcatact cactctcaca cacacactca | 400 |
tcaaaagaga ttctgattca tattcactct catccacata atggttttat | 450 |
ttttcatttc catacaaatg aatgttttaa tatgagtttt attattttct | 500 |
tttggttttg tagattcatc tccccttatg atgcatgaga aacggcattc | 550 |
tgtcatttca ttatatgatc aaaataattc taaagtacga ctactagtat | 600 |
tacctttatg ttagttcaat aaatattatt agatcctctg acattgtaaa | 650 |
tatgtttaca ctaggattta actaaaccgc gagcaatcgg tttatttggt | 700 |
tcttatacta aatatttgaa taaatttgat atcctaaact tataaatata | 750 |
aatttctaat gattagtgaa gaatcgtaat atatgatttg gatattattg | 800 |
attattgatt tcgtgattga atatagtgtt tttagggatg gaatgtgatc | 850 |
atattttgat ttcaaaaaca acatagattc cttattttcg ttgaacggtt | 900 |
tagattgaag ggaattaatt ttattgaacg gtttagattg aatcggatca | 950 |
tataaagttt aggagattgt taagaccaaa ttaccattaa tgattttgaa | 1000 |
tagcaaagaa caaaatccaa aattgaaatc aaaattgagg ccaaattaga | 1050 |
caaaatttca atttgtactt cccttttaat aataaaggga tatcaccaca | 1100 |
attgttattc agctctgcca ccactcatgt tgataatcaa actaactttt | 1150 |
tattttattt tttattacta actattttgg atcatattac tgtaaatata | 1200 |
aataattcct tacatatgac attttttatt acgtttaaca aaatataaag | 1250 |
aattatatgt ttcttttgtt tgtatgtatt atatgatcta ataaataaat | 1300 |
acttaaatta aataaaatat gaatatgcaa attaatactt attccaatat | 1350 |
tttttctgga aaaataaaat atttcatatt aaaattaatt aatataatca | 1400 |
gttacattaa tcatttaatt ggtcaaatca atcaaaatat tacgtaacca | 1450 |
ttccattgca ttggtttttg aatatatgaa gcagtctccc aaattagtta | 1500 |
tagcatatga tttcttaatc ttattatata aagtattttt tcacagttag | 1550 |
taactcacat tattgtgata catgtcagat ctatcgatct tacattttta | 1600 |
tactaagatg gtatcaagca gtaaatagag aaaaagtttt tgccattttg | 1650 |
atgtttatta acaaaaatta tttaatttaa aacaaaaatt actaaattaa | 1700 |
ttccaaaata atgtgtggat gactaaacta tttaaaattt aaatatcatc | 1750 |
aataaaattt acattaatat cgtatactca cgtatttagg tgggcattac | 1800 |
tgattttact atcataatca gaatttcgaa atcataataa tttatcctct | 1850 |
gttataataa attttcaact agtagacgaa cactacttgg gtttaacttg | 1900 |
aaaccaaaat ttttgtaaga attggtatct tttaaattta aatctttgag | 1950 |
attattttgg ttttggcatg aaagttttcg attacaaaca aacacttata | 2000 |
atcattgtat tgtaatgaaa aggaaaggaa ctcaaagatt tgttttctta | 2050 |
tttcgaccaa acaaaaggaa agaaacatgt tgcatatgta cggacaagac | 2100 |
atcccgatcc acgactcgga cgccgaagca gccaataaaa ggcaaaaaaa | 2150 |
ctttttgcta aggtacgagt aatatgcctc ttacacgtta tggtgttata | 2200 |
gtgtttgttt ttacctttaa tgatgtgttt tagtgtttca cctgtttcca | 2250 |
caactaaagt ttaaaaagtt caatttacga aacacattta caagaaaata | 2300 |
attattctgg tccaagggaa agaaatatga aaatcaacct tttgattagt | 2350 |
caatacacgt gcgcataatc aaagtcaaag atattctcca acattgcctt | 2400 |
gcttgtatgt gagcccacca cgacctatag ttttcctctt attcatttga | 2450 |
gacgtaaatg tttggtaaga aatccagaaa atacgatgtt aagatttctt | 2500 |
acattataaa ataaaataaa gatttattaa attatgtttt aagatgtgtg | 2550 |
cagaaataag aaaagaattt atcaccatca tttcaattaa tgtacatatg | 2600 |
tagggttcga catatgggta atccatttgg gttagaataa aaccagtttg | 2650 |
gattcagctt taatgggtat tgaatttatt atttaataga gtatttctaa | 2700 |
ttatttggtc tcaattcggg tctggtctag tcgggttcgg atcggtttgg | 2750 |
atacaaaatt tcaggcccta gaaataccaa aaaaatagaa acgggtattt | 2800 |
tgtatgcaaa taacggatac ccaaaaaaaa aaactttaaa aatttgtaaa | 2850 |
ttttaaataa tttaattata tttgaatata ttttctaaac ttttgataaa | 2900 |
caataacaaa taatttttaa atatttttag ttgttttgga tatttaggtc | 2950 |
taaaactaat ttacatattt agatttataa gtataatctt agacaattag | 3000 |
attatagtaa gattaataat aataaatatt ttggatctaa atttatgttc | 3050 |
gggttttcgg gtcctatttg ggtaacgggt tattacggac cgactcaata | 3100 |
cccacgggtt tactgaaact gtatccaatg aaataatttt ctacctaaaa | 3150 |
ccctaatccg ccccaacccg atttttacgg ttcgggtatc agattggata | 3200 |
tcggatcagg tttttctgcc caaccctata tgtaggtctt gagcaacaac | 3250 |
cccgaaccaa aacgatattc gtaaattggt ttggattcag cttttccaaa | 3300 |
tcggtggttt caaaatagaa gtttggtttc catttatgtt cggattttag | 3350 |
acttaaaaac taaatttccc aattgagttt gctaacaaat cctaaaaata | 3400 |
tgaattatag ggatttattt agtgttcgtt catttggcca ccaaatctaa | 3450 |
gagcgaaata taacgtttgt atatcttgtt gtctatgagt tttcagcgat | 3500 |
tccgacctga gcttatgtta ttttctccaa cctgtcccgg gaagagtccg | 3550 |
aaagatatac atatggttgt aaataatttg tatatatata tatatatata | 3600 |
tatataaata attacataca aaataaacca aattaaatgt ggttacctgt | 3650 |
aaacatgacc acgaatccag aagcatagca tttctttgaa tttaaacaga | 3700 |
atctaaaaga tgaattttca actgagtaag aaaaatttaa gatctcaatg | 3750 |
gagttattat atacttatat tctttcatta tatagaggtg tcgagggcca | 3800 |
atattaggtt tctaattagg acccacattt gtttccctgc ctataaattt | 3850 |
cccaaacaaa gcccgtcaaa cacatgtaac agaaaaacac acaaacacgt | 3900 |
ctacgagata acacgaaacg caagaacaat ccttgttcat tgtccaacat | 3950 |
tctcacgcct atacacaaac acatacaaac acgcaaaaag tcattaatat | 4000 |
ATGGATCAAG GAGGTCGAGG TGTCGGTGCC GAGCATGGAA AGTACCGGGG | 4050 |
AGTTCGGAGA CGACCTTGGG GAAAATATGC AGCAGAGATA CGAGATTCGA | 4100 |
GGAAGCACGG TGAACGTGTG TGGCTTGGAA CGTTCGATAC GGCAGAGGAA | 4150 |
GCGGCTAGAG CCTATGACCA AGCTGCTTAC TCCATGAGAG GCCAAGCAGC | 4200 |
AATCCTTAAC TTCCCTCATG AGTATAACAT GGGGAGTGGT GTCTCTTCTT | 4250 |
CCACCGCCAT GGCTGGATCT TCCTCCGCCT CCGCCTCCGC TTCTTCTTCT | 4300 |
TCTAGGCAAG TTTTTGAATT TGAGTACTTG GATGATAGTG TTTTGGAGGA | 4350 |
GCTCCTTGAG GAAGGAGAGA AACCTAACAA GGGCAAGAAG AAATGAgcga | 4400 |
gatataattc atgattattt ctaacgaaag taacaaagta taagaaataa | 4450 |
ttagtatgta tgaaaataaa ttatatgcaa taatcttatg atcatgattc | 4500 |
gagcatgaat ctatggtttg gaatgaaatc gaccgactgg tggtcttaat | 4550 |
tgtttttcga gaatacataa ttgaaaatag tgagattata tgagagcatc | 4600 |
cgttgatatg tagattatat gatctgatat gtttcagatc atgatgatca | 4650 |
ataaaatata acatttgcag ttactaatcc ttgtagtgaa ttatacatat | 4700 |
ttcacatttc aagtcttatt gatcggatac aaagcaataa gagtttttat | 4750 |
ctggtagaaa aaacgataga caatatcaaa atatttttaa aagaggtaac | 4800 |
aatagaaaca aatgacagta ctgcttttaa tactactaat tttttattac | 4850 |
tgttgacaac tactaaaatg gtatatgtct taccatcatt taccactcaa | 4900 |
aacttttatt tttcttcttt caattttttg tagaataata agaaatacaa | 4950 |
ctagattttc tttgaaataa aaaggaatac aactagattt ggtcatggat | 5000 |
aaaagtagag taagtcccgg ctagatttgg tcaatgatga actagctagg | 5050 |
tgatacatat tactgtttgt ttcttaggtg atacacatta tgacttaatc | 5100 |
gagagtttga ttcaaaataa tatgatgata aaatactgca tttgaaaatt | 5150 |
gggaattgga agtgttaaca attcctactt tatattctaa tattttttaa | 5200 |
gatttttaaa taaaagattt gtttacataa ttgttttttc tttccagttt | 5250 |
taatcttctt agtatagctt ctctaattat ttgtagaaag gctatgccca | 5300 |
tagtatatca ctagaaaaca tgttcctgga tatgataaaa gatagaagaa | 5350 |
taaacgggag gaagatttga ctaaatctca accaatgaca tgcttaagtg | 5400 |
tgttataaga acagtgatgt gatattaata atgagaatga tgcttcaatg | 5450 |
ttgagaaagg agagcatatc aatgataata agtatagagg tgttgatatg | 5500 |
gaggtgaaca tggaacaatg tgagtataaa taacttgaca cccatgaacg | 5550 |
gttcaagtca gcatcctgca tcaggcggga caaaatttat cctcaatttt | 5600 |
tttgtctatg ataaatccaa attcgtggag actatgactc ctgccatttc | 5650 |
acgagatgat cgagctctct tatacttttc acttaatgta catgtattat | 5700 |
ttttttgtag gcttacactt gaagagacgt ataatgattt gtttgttagt | 5750 |
agtttaaaat ttgatttgaa tttcataaac ttacaacttt tgaaaattta | 5800 |
atcgaacatg ttttaagttc ataaacaagt gctcggggag aaatggaaaa | 5850 |
gaggttgttg aagggaacac aagatgtttc ttaacaatca aacaa | 5900 |