fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G43650 BHLH92, bHLH092 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G43650.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, BamHI, NheI, NotI, SacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 635, 5336
EcoRI G|AATTC 1843, 2326
EcoRV GAT|ATC 1579, 4197, 4831
HindIII A|AGCTT 1317, 2229, 4638, 5462
HpaI GTT|AAC 2846, 5370
KpnI GGTAC|C 4389
NcoI C|CATGG 2153
NdeI CA|TATG 2802, 4306
PacI TTAAT|TAA 5324
PstI CTGCA|G 556, 1225, 1877
PvuII CAG|CTG 2738, 6657
SpeI A|CTAGT 4956, 6041
StyI C|C[AT][AT]GG 2138, 2153
XbaI T|CTAGA 3150, 3286, 3800


Click here to view TAIR data

>AT5G43650 genomic sequence (4039-4389,4888-5178,5386-5487,) length:7103
gtaattgtcc aatgggataa aagaaagttt ccaaactcag gcaaaacccg 
50
ttgatacgtg aactataagt gaaagcatta ggaaactata cacacctatg 
100
agactgagac atctccttat acaattcttg taacttttat attcactttt 
150
ctgaaattgt tttagcgcaa accagccaca aaaatacagt aattctccat 
200
cATGTTCTTG GTTGCTAGTA ACCGGGAAAT ATTGAAAGGG ATCTTAACCG 
250
GAAAgtaccg aaatttttta agtaaccgat tcgaagcatt tttgcttttt 
300
tgggccgtta taatgggccg ataatccaca acgccatatc gcgtgttcga 
350
aaacgcgccg ataacagaaa aagccaataa attctcggtg ggaaataaat 
400
tggtgaaatt taacggaaac cccaaattcc agaatcccca aatcgagagg 
450
ttaaagaaac ttcgattttg atctttcgaa gTGATCGGCA AGAGGTGACG 
500
GTGGACGGTG ACAGAACTGT CGGAGGTAGA GATCATCAAC CACCGGTGAC 
550
TACTACTGCA GCGGCGACAA CAAAGATGGC TATCCCGAGG CTGAGTCTTC 
600
TTCCTAACAA CGAGCACAAT TCTGATAACT ACGAAGATCT GGAACTTGAA 
650
TTTAGCTCTT CCGTATTAAG ATCCCTAGAG AGGTACTTAC CGCCGGAAAT 
700
ACTCACGGCG AATAGAGAAG AGAAGGCCAA ATTCATGTCA GACATTTTGC 
750
ACAAGTACAT TTCCCGCGAA GAATGTGCCA AAgtaattgc tctttctttt 
800
tgatctcaat ctctaaaatt gaaatcggta ataagaaatt acgatagtga 
850
tctttaggtt tatcttgtga tgatgaacaa ttagagagat cgatgtgaac 
900
agaagtttct gatgatttat tcacaaaagc tattacatga ttatatagct 
950
acaggagcgt atctagtttc ctaaagagat acaattagaa tcaattacgt 
1000
ttaatgtaca ttatgatgat tgatatgaga tcatatctca ttagatgaac 
1050
acatagaatc aatcccacaa tttctcagaa tagtttcatg tctgtttaat 
1100
gttccagGCT ATACGGTTCA AGAACTATAG GGAGTGGATA ATGTCCAATT 
1150
ATCAGgtgag gagactttag ctcgtcactt agattgtttt cttgatgcaa 
1200
atagttttga aatgtttcct ttttctgcag CCACGTTTCA GGGAGTTGTA 
1250
TAAACTTGAT CCCGAATCGT TATTGCTTCC GTGTTTCCGC AAGGCGGTCA 
1300
GAGAAAACAC CGAGGAAAGC TTCAGACGTA TAATGTTTGA ACCGTTTCCT 
1350
GGTGTTTACG TCTTTAAAAT GTTTCAGCCT GACTTCTTTC AGAAATTGCT 
1400
TGTTGAGgta atagtaacaa acacatcatc ttgccactta ttctctgccc 
1450
tgctcttacc tctttgtttg attaatcagG TAGAGAATAT GAGAAAGTGG 
1500
CTTCATGAGG CAAAATTGAT GATCAGGAAA CCAAACAATA AGAGTAAATA 
1550
TGGTGTTGTG CTTGACGACT TTGGCATGGA TATCATGCTT AAGCCACTCG 
1600
TGGAGGATTT TATCTTTCCT ATTTGCAAAG gcaaggcgta tatattactt 
1650
aaaaatgcat tagaaagact tttaaaaagt aacattaaac ttcactatgt 
1700
tgttttgcag TATTCTTCCC TCAAGTGTGT GGAACAATGT TTGACACTCA 
1750
ACATGGATTC GTTATTGAAA ATTGTGAAGA TAGGGATGCT GAATTAGgtg 
1800
agtccctttt gattttctga tattacttga gaaaaccaga gtgaattctt 
1850
taatctggtg cagtgatctt ttaaatctgc agGCTTTCAT GTGGAAAATT 
1900
CAGACATTAC ATTGAATGTT TGTTTGAGTA AACAAAGTGA GGGAGGGGAA 
1950
ATATTATTCA CAGGCACACG ATGCAATAAA CATTTGAAAG CAGGTCCAAA 
2000
GCCAGAGgta tgtgagtcct cttacgttcc tatattcagt aaatggcaaa 
2050
atggttagct aataaaggaa ccaattattt ctcactgaaa cagGAAATTT 
2100
TTGAGTACTG TCATGAACCG GGTCAAGCTA TACTTCACCT TGGCTGCCAC 
2150
AGCCATGGTG CAAAAGCCGC CATAACATCT TGTAGTCGGG CCAATATGAT 
2200
TCTTTGGTGC ATAAAgtaag caatcatgaa gcttgcctca ggatttcaga 
2250
tcacaactaa aacacctttt cttctgcatt tccatttgca gCTCTTTGTT 
2300
CAGAGAGATG CAAACTTATG ACAACGAATT CCGAGACTGG TGCGGTCAAT 
2350
GCGCCCGTGA AAAGAAAGAA AAGAAAAGCC AGAGTCTTGC TTCCAAAAGA 
2400
AAGGTTAAGA AAAGAAAAAA GGACATGATT TTGCTCAAGT TTATAAGATG 
2450
TTTTGTTTGA gcatggttat gaacctgtgg gggtccttat tgcaggagat 
2500
gattaggata atagagtgaa gccgaagccc gctgaaaaaa atgaagtcta 
2550
tgctttgaat tttgactctt tacttggaaa ataacactga gtatatgtag 
2600
aatcatttga tgtaaatagg tctttgtgtc ttcgaatttc ttacattact 
2650
actatgtaca tgaaagttac cagttacatg tttaggatcg gctatatgtt 
2700
tacagtttac tcgccgtatc gaagcagtgt tcagtgtcag ctgaaaaaga 
2750
gtacatatag ccggtccatt cggttagact catgaaaacc ggtttagtaa 
2800
tcatatgttt acagtgtcag cttttttttt gaaatgtatg atttggttaa 
2850
ccggttttaa aattgtgaac caattcaatt gtgcaattcc gaacactagc 
2900
gattcgaagt agagaaagta acattgtacc aagctaaacc aacggcgatg 
2950
aatgctagaa ccgcgatgtg atgtgtgatt aaagagaagg ttaggaggaa 
3000
gtagaggatg ataaattgat tcggaaatgt gtgaggtttt gtgtgacgcg 
3050
tgtggtggcg tcggcgatgg actagcggcg ctggtgattg gttgtgcggt 
3100
ttctttaacg ccggagatta cttgattcgc caccattgtt gctctggatt 
3150
ctagaaactt ctgaaaatcc taaattcgtt gggaaaagag gagaaagtca 
3200
aactgattca tgagaagtta agaaagccca agcccattaa attgagtatc 
3250
acttaattcg ttatttatac taaaaaagat cgttttctag aatcgaagtt 
3300
ggtagtgtaa aagaaaaaga agttgaagaa gcaagaattt tccatcgaag 
3350
tggtcaatta tccgagtgta gtaaagataa aatctcttat cagaaaataa 
3400
aataatcgaa gttggtcaat atttttagtc aagtcattca cacgaggaaa 
3450
tttcccaccc aagagttagg atacgtggaa agaaaatctc aatgactaat 
3500
gtgttacaat aattagacga agaataaact aatgccacac acacacacgc 
3550
acaaattcca cttgtgatga ctgatgaact taattattat tattaaaccc 
3600
taaggtttga taaaacggta tagggccggc tcttttcttt tctccacggt 
3650
gttgtgtttt ttgaactcac aaaggagatt ttgtacttta acttcaaaaa 
3700
gaaaattggt taatttgaaa acaaacaaac aaatagttat agcttttacg 
3750
cgtcacgtaa tgtctaaatt ttgttgccaa gacacgtcac ttgactttct 
3800
ctagagttca cctttgatac atcatttgac tgtctctggt tttctcctat 
3850
atacgtcact tcatctaacc aagaagctga gaaaactatt cattgaccac 
3900
gttctcaata tgtttcacgt gtgttaaatc aacaaaacca cacgtgatta 
3950
aatcataata ggtatataga cacaccacac aaaagacaac atcaaaaatc 
4000
acacaaatca agattgtcaa acacactaag agagaaagAT GGATAACTTT 
4050
TTTCTAGGTT TGAGTTGTCA AGAAGAAAAC AACTTCTGGG ATCTAATCGT 
4100
GGCCGACATC TCGGGTGATA GAAGCGTCAG TGTACCTATC AGAAGCGCCT 
4150
TTAGGTCATA TATGAAGGAC ACGGAACTGA GGATGATGTC GCCGAAGATA 
4200
TCTTCTTCGA AGGTGAACGT GAAGAAGAGA ATGGTCAATC TTCTGAGAAA 
4250
GAATTGGGAG GAGAAGAAAA ATACGGTGGC TCCAGAGAAG GAAAGAAGCC 
4300
GGCGACATAT GTTGAAAGAA AGGACGAGAA GAGAGAAACA AAAACAGAGT 
4350
TACTTAGCTC TCCATTCTCT ACTACCATTT GCCACTAAGg taccttgatt 
4400
atttgtgtaa tattaaactt gaaacgaact ttatttttct taatgacttg 
4450
gaaagaaaat catagtagtt ctaacaaaaa tccgaatttt tacagttcaa 
4500
aatggcacac aaaattagat attcggtaga aatggattag attcatggat 
4550
actaaatttt cagaatttcg actactatgt ctgttcactg atctttgatg 
4600
tttgtatgct taattacatg cattgatctg gttttagaag cttatcttaa 
4650
atatctataa atttatattg agtaaggtat aatataaagt tttgagtatg 
4700
ataaatttcc aactacaatc atttgtataa aatgtttgta agtttttgca 
4750
ctggaatctt ttcttttatc actattttct tttacttaag gattttgata 
4800
tagaaacaag tttaaagaac atcatagatt gatatcgaaa caagtttcaa 
4850
gaccatcatt tctccttata ttctcatttt atttcagAAT GACAAAAATT 
4900
CGATTGTCGA AAAAGCCGTG GATGAGATTG CGAAATTACA AAGATTAAAG 
4950
AAAGAACTAG TGAGAAGAAT TAAAGTGATT GAGGAAAAAT CAGCAAAGGA 
5000
TGGTCATGAT GAAATGAGTG AAACAAAGGT TAGGGTTAAT CTAAAAGAAC 
5050
CTTTGTCTGG ACTAGATTCA ATGCTTGAAG CGCTTCATTA TCTTAAATCA 
5100
ATGGGAACAA AACTGAAAAC AGTCCATGCC AATTTCTCTC CTCAAGAGTT 
5150
TTCTGCGACC ATGACCATCG AGACTCAGgt acatatttaa ttcgattcga 
5200
attggttgaa tccggttttg gtttctcttt ggttatgaca acttgacaag 
5250
tacataaagg taataatagg taggttgttt tgtgttagta gcaaaaaaaa 
5300
agtagatggt tgtatgtttt tttaattaag tagttagatc tgtattagtg 
5350
tgatgatatt aaatttaaag ttaacttttt ggcagATTAG AGGAGAGGAG 
5400
GTTGAAAAGA GAGTGGAAAG AAGACTCCAG GAAACTGAAT GGAAACTTCT 
5450
CTTTCTCCCA GAAGCTTCCT TTTACAAAGA CTACTAAttc tgttgacttt 
5500
ctgtcattaa ttttcttttg tatttaaatt tgtatatagt taaatactta 
5550
aattaactgg tcattgcttt attgacacac ataaagaaaa ataatggggc 
5600
acactacttt tgagttttga gttttgaggt ttgaaaaata aaactaagaa 
5650
aataatattg atagaatata atagaaaatt tatcaagtat ataaccatat 
5700
atagtgccaa aatttgcaaa ttgtgtgata gataatttgg taaatatgta 
5750
atgcatttta tcaataaaaa ataccataaa atttgattaa aaccagcata 
5800
aaaacctatc ccaattaaag tttattttga aaaatagaaa ttggaaagtt 
5850
caatactttg gctattatta tttattattc aatactattt actacgtaca 
5900
ctctatagta agagttttta aacatacaat gttattcttc aacttaatac 
5950
gttgctggaa caagtaaaca actcaaaaca ttaaataact aggaacatag 
6000
ggattaatat atttgtgcgt tacaatctta ataattgtga actagtacta 
6050
tcttattagc aaatacactt gttcaccatg tggttcatta tttaattact 
6100
tatgaaatcg ccaaaaaaga ccatagattt gtcataggaa atacaaaaat 
6150
ggataataaa ctttcaccta ccgagtcaaa acaagaagga actaaacaag 
6200
aaaacagctc cttcaaccaa aactttttgc atatttatca aatatttgaa 
6250
aactttaaat ttggtaaaat gaatgaggag caaaataaga taatttaaca 
6300
cagtactcaa atctaaaccc tcctggtgga gttaaacaga aagtcatcaa 
6350
aataattatc gaaattaaga cttaaaaatg agatcaaagt catctaagaa 
6400
gatagatatg gagataagta gcttctTCAC TTGAGAGGGA TAAACCTGGA 
6450
GGAATTGGTA GCACCAACAC CAGGCCTACC GTGCTTTACC GGTTTGTATG 
6500
AGATTGAGAA CTCAGCCAAG TAATGTCCAA TCATCTCCGG CTTGATCTCG 
6550
ACTTGGTTAA AAGTCTTTCC GTTGTACACA CCAATGATGC TTCCAATCAT 
6600
TTCAGGCACA ATGATCATGT TCCTCAAGTG TGTTCTCACT GATGCTGGCT 
6650
TCTCACCAGC TGGTGCCTCC ATTTTctgct caaagacaca aaaatcattg 
6700
actctttagt attttaaaac catttggttg cagagaaaca gcacattatt 
6750
ctatatatgg atacataata aggacaatag cacaaaagtg gggtatagat 
6800
tatctgagtt ataaaaaaaa tgacattatg tatagtcgca ctcaagacat 
6850
tctaagacat aatctttatt gtttaaagcc atttggtcac aaaaatcgaa 
6900
cgcaaagttg catagggaag aatgcatatt tgcatagaga atgaaatacc 
6950
aaagtaacat tatcgaaaac cgggtataga ttatctgaat tagtcacaca 
7000
agactaatgc atagaatata aaaacatgct gataatcttt taactaagag 
7050
ggataacacg attctattag ccataaaata aaccatcaaa atcgctcaac 
7100
tta
7150