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| Locus | Common name | Short description |
| AT5G44260 | Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) |
>AT5G44260.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AclI, AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvaI, AvrII, BaeI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsoBI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtsI, DraI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, , NarI, NdeI, NheI, NotI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 4 |
| AccI | GT|[AC][TG]AC | 35 |
| AccII(FnuDII) | CG|CG | 110, 213 |
| AccIII(BspMII) | T|CCGGA | 182 |
| AciI | C|CGC | 75, 653, 700, 711, 866 |
| AflII | C|TTAAG | 750 |
| AflIII | A|CPuPyGT | 214 |
| AhdI | GACNNN|NNGTC | 242 |
| AluI | AG|CT | 63, 418, 480, 667, 772, 969, 989, 1051, 1066, 1082 |
| ApaLI | G|TGCAC | 210 |
| ApoI | Pu|AATTPy | 193, 627, 1006 |
| AvaII | G|G[AT]CC | 235 |
| BalI | TGG|CCA | 966 |
| BamHI | G|GATCC | 159 |
| BfaI | C|TAG | 1068, 1098, 1115 |
| BglII | A|GATCT | 894 |
| BlpI | GC|TNAGC | 697, 1030 |
| BsaAI | PyAC|GTPu | 1016 |
| BsaBI | GATNN|NNATC | 1112 |
| BsaHI | GPu|CGPyC | 4 |
| BsaJI | C|CNNGG | 58, 348, 503, 809, 871, 963 |
| BsaWI | [AT]|CCGG[AT] | 182, 304, 520 |
| BsiHKAI | G[AT]GC[AT]|C | 210 |
| BsiWI | C|GTACG | 412 |
| BslI | CCNNNNN|NNGG | 168, 557, 1020, 1069 |
| BsmI | GAATGCN| | 359 |
| Bsp1286I | G[GAT]GC[CAT]|C | 210 |
| BspDI | AT|CGAT | 581 |
| BspEI | T|CCGGA | 182 |
| BsrFI | Pu|CCGGPy | 290, 1025 |
| BsrI | ACTGGN| | 233 |
| BssKI | |CCNGG | 258, 503 |
| BstF5I | GGATGNN| | 186, 1121 |
| BstUI | CG|CG | 110, 213 |
| BstYI | Pu|GATCPy | 159, 200, 894 |
| BtgI | C|CPuPyGG | 348, 809, 871, 963 |
| BtrI | CAC|GTC | 476 |
| Cac8I | GCN|NGC | 212, 968, 1025 |
| Cfr10I | [AG]|CCGG[TC] | 290, 1025 |
| ClaI | AT|CGAT | 581 |
| DdeI | C|TNAG | 154, 319, 483, 696, 837, 1029 |
| DpnI | GA-CH3|TC | 158, 199, 534, 636, 820, 893, 1106, 1112, 1130 |
| DpnII | |GATC | 158, 199, 534, 636, 820, 893, 1106, 1112, 1130 |
| DraIII | CACNNN|GTG | 1016 |
| EaeI | Py|GGCCPu | 24, 966, 1023 |
| EcoRI | G|AATTC | 193, 1006 |
| Fnu4HI | GC|NGC | 700, 771, 841, 1047, 1053, 1059 |
| HaeIII | GG|CC | 23, 965, 1022, 1060 |
| HindIII | A|AGCTT | 64, 419 |
| HinfI | G|ANTC | 144, 150, 401, 509, 744, 833 |
| HpaII | C|CGG | 21, 181, 258, 289, 303, 503, 519, 1024 |
| Hpy188I | TCN|GA | 147, 153, 202, 398, 608, 883 |
| Hpy99I | CG[AT]CG| | 5, 88, 204, 273, 541, 610, 705, 814, 985 |
| HpyCH4III | ACN|GT | 42, 206, 241, 334, 409, 430, 497, 539, 859, 983 |
| HpyCH4IV | A|CGT | 3, 475, 1015 |
| HpyCH4V | TG|CA | 209, 553, 682, 769, 1048 |
| MboI | |GATC | 158, 199, 534, 636, 820, 893, 1106, 1112, 1130 |
| MluI | A|CGCGT | 214 |
| MscI | TGG|CCA | 966 |
| MseI | T|TAA | 563, 749 |
| MslI | CAPyNN|NNPuTG | 260 |
| MspA1I | C[AC]G|C[GT]G | 481, 668, 1052 |
| MspI | C|CGG | 21, 181, 258, 289, 303, 503, 519, 1024 |
| MwoI | GCNNNNN|NNGC | 217, 675, 706, 771, 997, 1030, 1053, 1065 |
| N.BstNBI | GAGTCNNNN|N | 406 |
| NaeI | GCC|GGC | 1025 |
| NciI | CC|[CG]GG | 258, 503 |
| NcoI | C|CATGG | 963 |
| NgoMIV | G|CCGGC | 1025 |
| NlaIII | CATG| | 227, 796, 962, 1140 |
| NlaIV | GGN|NCC | 159 |
| NruI | TCG|CGA | 111 |
| NsiI | ATGCA|T | 683 |
| PflMI | CCANNNN|NTGG | 1020 |
| PmlI | CAC|GTG | 1016 |
| PstI | CTGCA|G | 1049 |
| PvuII | CAG|CTG | 481, 668, 1052 |
| RsaI | GT|AC | 187, 411, 615, 716 |
| Sau3AI | |GATC | 158, 199, 534, 636, 820, 893, 1106, 1112, 1130 |
| Sau96I | G|GNCC | 235, 1061 |
| ScaI | AGT|ACT | 616 |
| ScrFI | CC|NGG | 258, 503 |
| SfcI | C|TPuPyAG | 1049 |
| SmlI | C|TPyPuAG | 750 |
| StyI | C|C[AT][AT]GG | 963 |
| Taqƒ¿I | T|CGA | 6, 381, 580, 830, 986 |
| TfiI | G|A[AT]TC | 509, 744, 833 |
| TseI | G|C[AT]GC | 771, 841, 1047, 1053 |
| Tsp45I | |GT[CG]AC | 280, 331 |
| Tsp509I | |AATT | 192, 626, 900, 1005 |
Click here to view TAIR data
>AT5G44260.1 length:1146
ATGGACGTCG AACATCACAA ATCCGGCCAC ATCAGTAGAC CAACGGTGGA | 50 |
TATTCCACCG AGGAAGCTTC TTTCCTCCGC CAAGTCTCCG TCGTCAGTTT | 100 |
CAAGTCCCCT TCGCGACTAT AAAGAACAGA AAGACTATTG TTACGACTCT | 150 |
GACTCTGAGG ATCCTTACGC TGGAGACCAT TTCCGGATGT ACGAATTCAA | 200 |
GATCCGACGG TGCACGCGTA GCCGTAGCCA TGACTGGACC GACTGTCCTT | 250 |
TCTCTCATCC CGGTGAAAAG GCTCGTCGCC GTGACCCTCG CCGGTTTCAC | 300 |
TACACCGGAG AAGTATGCCC TGAGTTTAGC CGTCACGGTG ATTGTAGCCG | 350 |
TGGTGATGAA TGCGGTTTCG CTCACGGGGT TTTCGAGTGT TGGCTTCATC | 400 |
CGAGTCGTTA CCGTACGGAA GCTTGTAAAG ACGGTAAGCA TTGTAAGAGG | 450 |
AAAGTTTGTT TCTTTGCTCA TTCTCCACGT CAGCTGAGAG TTCTTCCACC | 500 |
GTCCCCGGAG AATCATATTT CCGGTGGTTG CGGTGGATCA CCGTCGTCAT | 550 |
CCCCTGCATC GGTTTTAAGC AATAAAAATA ATCGATGTTG CTTGTTTTGT | 600 |
TCCCATTCTC CGACGAGTAC TCTCTTGAAT TTATCACGAT CACCTTCATC | 650 |
GTCTCCGCCT TTGTCTCCAG CTGATAAAGC CGATGCATTT TCACGGCTGA | 700 |
GCCGCCGTCG CACCGCCGTA CTAAACGAAC TGATTAGTTC TTTAGATTCC | 750 |
TTAAGTCTCA CGGAAGCACT TGCAGCTTCT TCATCGTCTC CCGTTACCAT | 800 |
GCCCATTTCC ACGGCGACGA TGATCGCTTC ATCGAATCTA AGCAGCAACC | 850 |
ACCACCACCA CCGTCTTCCG CCGTGGCTTG ATGTCGGAGA CAGAGATCTC | 900 |
CAATTACAAC AGAGTAGTCC TCTACGATTT GCTCTTTCAC CTTCTTCAAC | 950 |
TCCAAGTTAC CTCCATGGCC AGCTTCAGCC ACCACCGTCG AGCTTCTTTG | 1000 |
GCGATGAATT CACACCACGT GGTGGCCGGC TAAGCGATTT CTCGGTGGCT | 1050 |
GCAGCTGCGG CGGCCCAAGC TAGGGATAAA AATAGCTTTG AAGTCGGTTC | 1100 |
TAGTGGCGAT CTTGATCTAG GATGGGTGAA CGATCTTTTG ACATGA | 1150 |
>AT5G44260.1 longest ORF length:381
MDVEHHKSGH ISRPTVDIPP RKLLSSAKSP SSVSSPLRDY KEQKDYCYDS | 50 |
DSEDPYAGDH FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRFH | 100 |
YTGEVCPEFS RHGDCSRGDE CGFAHGVFEC WLHPSRYRTE ACKDGKHCKR | 150 |
KVCFFAHSPR QLRVLPPSPE NHISGGCGGS PSSSPASVLS NKNNRCCLFC | 200 |
SHSPTSTLLN LSRSPSSSPP LSPADKADAF SRLSRRRTAV LNELISSLDS | 250 |
LSLTEALAAS SSSPVTMPIS TATMIASSNL SSNHHHHRLP PWLDVGDRDL | 300 |
QLQQSSPLRF ALSPSSTPSY LHGQLQPPPS SFFGDEFTPR GGRLSDFSVA | 350 |
AAAAAQARDK NSFEVGSSGD LDLGWVNDLL T | 400 |