Alias |
|
TF Classification |
FioreDB | C3HZnF (Click to show phylogenetic tree) |
RARTF | C3H-type 1(Zn) / putative zinc finger protein |
AtTFDB | |
PlnTFDB | C3H (v3.0), C3H (v1.0) |
DATF | C3H |
|
TAIR short description |
Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) |
TAIR annotation |
Zinc finger C-x8-C-x5-C-x3-H type family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G03790.1); Has 1182 Blast hits to 968 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 15; Plants - 396; Viruses - 3; Other Eukaryotes - 353 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_0460_x |
External link |
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Gene Ontology (GO) |
(C) 10494: other cytoplasmic components |
->cytoplasmic stress granule |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46872: other binding |
->metal ion binding |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(C) 932: other cytoplasmic components |
->P-body |
|
miRNA/tasiRNA |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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soybean |
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1 |
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1 |
rice |
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sorghum |
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physcomitrella |
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Total |
|
|
1 |
|
1 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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ID |
Species |
Construct |
Date |
Comment |
Phenotype |
Photo |
ID533 |
Torenia |
35S:AtCDS-SRDX |
2007-07-06 |
flower bulk, 3 lines  |
no phenotype  |
  |
|
Comment |
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