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| Locus | Common name | Short description |
| AT5G48890 | LATE | LATE FLOWERING, C2H2-like zinc finger protein (.1) |
>AT5G48890.1 genomic map
>>Show CDS map
Uncut enzymes: AatII, AccII(FnuDII), AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, AscI, AvaI, BaeI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglII, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BssHII, BssSI, BstAPI, BstEII, BstUI, Bsu36I, BtgI, BtsI, Cfr10I, DraIII, DrdI, EagI, EarI, EciI, EcoNI, FauI, FokI, FseI, FspI, HgaI, HindIII, HphI, I-CeuI, I-SceI, KasI, MboII, MfeI, MluI, MlyI, MnlI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PflMI, PleI, PmeI, PshAI, PspOMI, PstI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, StuI, SwaI, TliI, Tth111I, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| Acc65I | G|GTACC | 85 |
| AccI | GT|[AC][TG]AC | 378, 1471, 4438, 5913 |
| AciI | C|CGC | 2695, 4182 |
| AclI | AA|CGTT | 5033, 5051 |
| AflII | C|TTAAG | 226, 3159, 4890 |
| AflIII | A|CPuPyGT | 946, 4241, 4434, 5234, 5571 |
| AluI | AG|CT | 35, 507, 655, 697, 796, 1432, 2353, 2485, 2684, 3873, 3885, 4133, 5292, 5803, 5994 |
| ApaLI | G|TGCAC | 3936 |
| ApoI | Pu|AATTPy | 703, 1112, 1122, 1141, 1203, 1277, 2075, 2142, 2475, 2564, 2592, 4931, 4956, 5168, 5704, 5815 |
| AseI | AT|TAAT | 996, 2085, 5185, 5285, 5401, 5533, 5598, 5688, 5936 |
| AvaII | G|G[AT]CC | 805, 2823 |
| AvrII | C|CTAGG | 4146 |
| BalI | TGG|CCA | 5470 |
| BamHI | G|GATCC | 116 |
| BanI | G|GPyPuCC | 85 |
| BclI | T|GATCA | 5541 |
| BfaI | C|TAG | 1305, 1434, 1832, 2351, 2399, 2666, 3018, 4119, 4145, 4188 |
| BglI | GCCNNNN|NGGC | 4203 |
| BlpI | GC|TNAGC | 5802 |
| BsaAI | PyAC|GTPu | 1028 |
| BsaJI | C|CNNGG | 736, 4146, 4395 |
| BsaWI | [AT]|CCGG[AT] | 989 |
| BsiEI | CGPuPy|CG | 840, 2807 |
| BsiHKAI | G[AT]GC[AT]|C | 3936 |
| BslI | CCNNNNN|NNGG | 1994, 3676, 4172 |
| BsmI | GAATGCN| | 4856 |
| Bsp1286I | G[GAT]GC[CAT]|C | 3936 |
| BspDI | AT|CGAT | 838 |
| BspHI | T|CATGA | 2341 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 85 |
| BsrGI | T|GTACA | 4697 |
| BsrI | ACTGGN| | 616, 1751 |
| BssKI | |CCNGG | 16, 70, 735, 1021 |
| BstBI | TT|CGAA | 5951 |
| BstF5I | GGATGNN| | 1426 |
| BstNI | CC|[AT]GG | 16, 70 |
| BstXI | CCANNNNN|NTGG | 4832 |
| BstYI | Pu|GATCPy | 116 |
| BstZ17I | GTA|TAC | 378, 5913 |
| BtrI | CAC|GTC | 276 |
| Cac8I | GCN|NGC | 197 |
| ClaI | AT|CGAT | 838 |
| DdeI | C|TNAG | 63, 847, 1356, 2118, 3186, 3218, 3962, 4289, 4712, 4720, 5021, 5039, 5501, 5801 |
| DpnI | GA-CH3|TC | 115, 244, 500, 835, 839, 1600, 2806, 4004, 4042, 4448, 4487, 4499, 5458, 5540, 5629 |
| DpnII | |GATC | 115, 244, 500, 835, 839, 1600, 2806, 4004, 4042, 4448, 4487, 4499, 5458, 5540, 5629 |
| DraI | TTT|AAA | 1770, 1791, 2035, 2064, 2146, 2237, 2890, 3104, 3814, 4972, 5226, 5811 |
| EaeI | Py|GGCCPu | 5470 |
| EcoO109I | PuG|GNCCPy | 806, 2824 |
| EcoRI | G|AATTC | 703, 1203 |
| EcoRV | GAT|ATC | 97, 1161, 1454 |
| Fnu4HI | GC|NGC | 37, 414, 696, 2122, 2695, 4185 |
| HaeII | PuGCGC|Py | 74 |
| HaeIII | GG|CC | 873, 1023, 2645, 2663, 2693, 4151, 4835, 5469 |
| HhaI | GCG|C | 73 |
| HinP1I | G|CGC | 73 |
| HincII | GTPy|PuAC | 915, 4219, 4427 |
| HinfI | G|ANTC | 324, 475, 540, 668, 1037, 1378, 1899, 2424, 2817, 3015, 3348, 3617, 5104, 5120, 5765 |
| HpaI | GTT|AAC | 915 |
| HpaII | C|CGG | 734, 988, 1020, 2661 |
| Hpy188I | TCN|GA | 62, 148, 432, 867, 1211, 1902, 1911, 3614, 4325, 4346, 4604, 4981, 5636, 5857, 5879 |
| Hpy99I | CG[AT]CG| | 919, 1001, 1420, 1889, 4327, 4804 |
| HpyCH4III | ACN|GT | 82, 1950, 2094, 2524, 2832, 2987, 3430, 3634, 3732, 3740, 4329, 4420, 4570, 4948, 5562, 5605 |
| HpyCH4IV | A|CGT | 275, 781, 917, 1027, 1560, 2713, 4241, 4432, 4461, 4654, 4805, 5032, 5050, 6015 |
| HpyCH4V | TG|CA | 38, 194, 198, 286, 679, 694, 1479, 1564, 1684, 2010, 2551, 2784, 3470, 3578, 3683, 3935, 4406, 4856, 5680 |
| KpnI | GGTAC|C | 85 |
| MboI | |GATC | 115, 244, 500, 835, 839, 1600, 2806, 4004, 4042, 4448, 4487, 4499, 5458, 5540, 5629 |
| MscI | TGG|CCA | 5470 |
| MseI | T|TAA | 208, 225, 457, 495, 535, 549, 590, 784, 914, 976, 995, 1047, 1222, 1250, 1373, 1576, 1712, 1769, 1778, 1790, 1820, 1843, 2034, 2063, 2084, 2088, 2145, 2152, 2194, 2209, 2236, 2318, 2536, 2588, 2889, 3103, 3158, 3234, 3289, 3433, 3572, 3701, 3768, 3813, 3950, 4091, 4592, 4632, 4702, 4787, 4799, 4889, 4960, 4971, 5095, 5146, 5184, 5225, 5284, 5338, 5354, 5375, 5400, 5528, 5532, 5597, 5644, 5687, 5706, 5792, 5810, 5935, 6012 |
| MslI | CAPyNN|NNPuTG | 1648, 2346, 2559, 3576 |
| MspA1I | C[AC]G|C[GT]G | 698, 4184 |
| MspI | C|CGG | 734, 988, 1020, 2661 |
| MwoI | GCNNNNN|NNGC | 34, 2692, 4194, 4314 |
| N.BstNBI | GAGTCNNNN|N | 480, 2822, 5109 |
| NciI | CC|[CG]GG | 735, 1021 |
| NlaIII | CATG| | 158, 192, 196, 585, 664, 945, 1176, 1670, 2008, 2278, 2340, 2387, 2418, 3137, 3310, 3576, 4370, 5233, 5450, 5455, 5570, 5893 |
| NlaIV | GGN|NCC | 85, 116, 805, 2824 |
| NsiI | ATGCA|T | 195 |
| NspI | PuCATG|Py | 197, 946, 2279, 3577, 5234, 5571 |
| PacI | TTAAT|TAA | 2088, 5532 |
| PciI | A|CATGT | 946, 5234, 5571 |
| PmlI | CAC|GTG | 1028 |
| PpuMI | PuG|G[AT]CCPy | 806, 2824 |
| PsiI | TTA|TAA | 1136, 2256, 4458, 4728, 4917, 5174, 5905, 5968, 6005 |
| PspGI | |CC[AT]GG | 16, 70 |
| PvuI | CGAT|CG | 840, 2807 |
| PvuII | CAG|CTG | 698 |
| RsaI | GT|AC | 12, 84, 297, 788, 2547, 4417, 4696, 4716, 5611 |
| Sau3AI | |GATC | 115, 244, 500, 835, 839, 1600, 2806, 4004, 4042, 4448, 4487, 4499, 5458, 5540, 5629 |
| Sau96I | G|GNCC | 805, 1023, 2693, 2823, 4835 |
| ScrFI | CC|NGG | 16, 70, 735, 1021 |
| SfcI | C|TPuPyAG | 138, 5998 |
| SmlI | C|TPyPuAG | 226, 2860, 3159, 3494, 3828, 3877, 4890 |
| SphI | GCATG|C | 197 |
| SspI | AAT|ATT | 1809, 2261, 4098, 4873, 5517, 5958 |
| StyI | C|C[AT][AT]GG | 4146, 4395 |
| Taqƒ¿I | T|CGA | 837, 1890, 1896, 2601, 2908, 5950 |
| TfiI | G|A[AT]TC | 324, 668, 1037, 1899, 2424, 3015, 3348, 5765 |
| TseI | G|C[AT]GC | 37, 414, 696, 2122, 4185 |
| Tsp45I | |GT[CG]AC | 477, 985, 1302, 1558, 3966, 4474 |
| Tsp509I | |AATT | 210, 441, 455, 520, 533, 600, 702, 993, 1094, 1103, 1111, 1121, 1131, 1140, 1153, 1202, 1263, 1276, 1329, 1574, 1693, 1780, 1814, 2038, 2074, 2082, 2086, 2129, 2141, 2150, 2192, 2207, 2212, 2374, 2407, 2474, 2499, 2538, 2563, 2591, 2723, 3053, 3100, 3237, 3306, 3425, 3528, 3703, 4557, 4594, 4645, 4789, 4930, 4955, 4962, 5079, 5148, 5167, 5238, 5282, 5340, 5377, 5398, 5402, 5410, 5530, 5578, 5595, 5646, 5654, 5662, 5670, 5685, 5689, 5703, 5814, 5839, 5870, 5901, 5933, 5937 |
| TspRI | NNCA[CG]TGNN| | 2527, 2651, 3635, 4363, 4493, 5563 |
| XbaI | T|CTAGA | 3019, 4120 |
| XmnI | GAANN|NNTTC | 1934, 2408, 3307, 5035, 5053 |
Click here to view TAIR data
>AT5G48890 genomic sequence (4000-4521,) length:6021
tgaatgagat ttagtacCAG GAAAACCAGC AAAATAAGCT GCAACTCTAC | 50 |
ACTCCATTGC TCTCTGAGAA CCAGGCGCTA TCACGGTACC AACAACGATA | 100 |
TCACCAACTT CACTTGGATC CAAAGATGTT CTTTCCACTA CAGCctaatc | 150 |
agaacaaacc atgaaacata agaaatcatt gatactacta ctccatgcat | 200 |
gcacaaggtt taattgatga cttacCTTAA GAACAGAAGC AAGAAGATCA | 250 |
TCAGGAAGAG TGTCTTTGAA ACCTCCACGT CTCGCTTTGC AAATGGCGGT | 300 |
ACGATATGCC ctgaagaaga agaagaatca agaaacaaag aaaactaaag | 350 |
aaagtgaaag tgaagcaaac tcaatgagta tacttacGCT ACAATCACAA | 400 |
TGTCATCTCC AAAAGCAGCC ATtggggaaa cttcagaaac acaattcaca | 450 |
ggctaaaatt aacaaaaaca caagtgagtc acataataaa acagagttaa | 500 |
agatcatcag cttccacaaa caatttcaat gtctaattaa gactcacgga | 550 |
ttaagacaac taaacttaca gacagaagag aaggttcatg tttaagagaa | 600 |
gaattagaag aagaaactgg attgagatga cgaagcaata tcttttgtct | 650 |
ttccatagct ctctccatga ttctctctgt tgcaaacact tgtgttgcag | 700 |
ctgaattcta atggtgattg aaagacaaaa actttccggg gaaactgaaa | 750 |
tgggtttggt tgatttttct ggaaagggga agacgttaag tacaatgagc | 800 |
ttcagggtcc tcatttttat cgtgggagag atttttgatc gatcgttctc | 850 |
agttctcaca agtctggtct gattggcctc gttgccaaaa ccttgtcttg | 900 |
tcgtatttgt ataagttaac gtcgttacga aaatatcgca ttttgacatg | 950 |
ttttacgcca catacaaact cacgccgtta aaaatgtgac cggaaattaa | 1000 |
tcgtcggcaa ctataactaa accgggccac gtgggaagaa tctaactttt | 1050 |
aagcaataaa tgtttcttct cattttgggt attagtgatt ttgataattt | 1100 |
gagtaattta caaatttaga agaatttgag ataatttata aaattttagt | 1150 |
gaataatttg gatatccaga taatatacat gatttgtatt ctttacccac | 1200 |
aagaattcat atcggatata gatttaagtt gttttgttta gtaagaaaga | 1250 |
gttaagtatc cttcaattat tttgtaaaat tctcgtccaa aaaatagttg | 1300 |
ttgtgactag aatataccat ctaataaatc aattttgaga gactaaaacg | 1350 |
gattttctta gataagtaaa gtctttaaga ctcgtaaaag ataagatgga | 1400 |
gagaggtcaa gaaagttacc cgacggatga atgagctagt aagagttcca | 1450 |
atagatatca aaatctaaaa gtagacaata tgcaaatgtt gagataaccg | 1500 |
attgttcaag attatatata caaaaatagt gttgagagtt agatgaggag | 1550 |
tgaaagaagt gacgttgcat ttggcaatta actcttttgc catactcttt | 1600 |
tgatcctcca ccactcttcc taccaacctc cttacttatc tttcattttt | 1650 |
atgcctacct aaccttccat tcatgttaga tttcttgcaa acctaatttc | 1700 |
ttttatttgt ttattaagta tctaacttat tacataaagt aaggttttga | 1750 |
actggttttg tttttctatt ttaaaatgtt taattatcta tttaaaaaca | 1800 |
ataaatcaaa tattgaattg attaaatatg ttactaggtt tctcttaaat | 1850 |
ctatacatat atatatatat gtttttcaat ggaggttgtc gtcgatttcg | 1900 |
attcagatta ctccgacaaa gaggaagaag aaccagttca acatcttcaa | 1950 |
acagttcttc ttcccattct ctaatagtca aagtgaaacc attatgaggc | 2000 |
aaagtattcc atgcaaacaa tactattttt tatttttaaa attacattac | 2050 |
taatagtatt gtttttaaaa taaaaaattc agtaattaat taaaacagtc | 2100 |
ctctacatta ctactcaact aagcagccca aattagaaac agaattttaa | 2150 |
aaattaaaga aaagaaacat aatagtccta tttttatttt cataattaaa | 2200 |
taataatcaa ttaaattggg tctttttgtt gagtagttta aataaaatag | 2250 |
tctatttata aatattgatt atcaaaaagc atgtcaagtt gtgtaatagg | 2300 |
agaagagcaa aatcctactt taatatactc cctatatttt tcatgactat | 2350 |
gactagcttt gtcaaaccta aatgaaattg tgctttgaca tgaagcataa | 2400 |
ctagaaacaa ttcaaaagcc atgagaatcc taaaacaaaa accaacacaa | 2450 |
aaatacatac accgaaaaga aagaaaattt gtatgtagct cacgctatac | 2500 |
aatttatgta acccaaacag atttacagtg tagttagtta attcacttgt | 2550 |
actgcattgt gatgaatttg agattgatga aaacatatat taaatttcaa | 2600 |
tgtcgaaaag aaaataactt gcgttggtgg tttatagagg tgtaaaggcc | 2650 |
agtgggttgt ttccggccta gtaataacaa atgaaagcta aacgggccgc | 2700 |
aacaagtcca taaaacgtaa aactaattgg cttacttttt ttggtatagt | 2750 |
gaacagagga agtagccaac tatgaggaga caagttgcaa gggaatgtgg | 2800 |
gcggtgcgat cggtcaggag tcaggaccca tcacagtctt tatgactacc | 2850 |
catttgcttc tcaagttgtg gagtgttctg cttctattct ttaaacaaat | 2900 |
atattgattt cgactgatgt ttttttcttt tttttttttt ttgggggctg | 2950 |
aacacaactt ttcattatac aaacattagt tccatacacg gtttatcaac | 3000 |
ctctacaaaa cgattgaatc tagataagca ctaatgaata aagccaaata | 3050 |
tcataattca taaatgaaag agattttcct tttatttgat ttctttcacg | 3100 |
caatttaaac acaatcttga actctcattc tttgtttaca tgatatatcg | 3150 |
ttatataact taagcatagt atttagtaaa aacatactta gttttttttt | 3200 |
tttggtagga aaaatatact tagtttttct gtaacttaaa ttattagaaa | 3250 |
gtagaaaatg aaatagagta acaagaacca acttttttta ttaaaatatg | 3300 |
atgaaataat tcatgtgtaa atatgtgtct caaagaaggt aatcttgtga | 3350 |
ttcttggtgt gccaaaatga aagacaaagg taatagtcaa agttcactaa | 3400 |
aggaaataga gttccatttg cgaggaaatt acagttaagc caatagcaaa | 3450 |
tagagttcca tttagagatg atgcaaaacc caaaaatgct aatctcaaga | 3500 |
tatgaaaata aaaagaagtt tcatttccca attcaaaggt ctctttcttt | 3550 |
ctcaccaatc aatctccttt tcattaacat gcaccacctt tactcattct | 3600 |
cttctctctc tttatctgac tctctcttat ctccactgtt cccaagccca | 3650 |
tacgggcaaa agaacctgct cccaaagttg gctctgcaac agaacagaac | 3700 |
tcttaattgt agtaacacta atgtatccac tcacagtctc acagtttcca | 3750 |
actctcctca aacaccatct taaacttgac ttctcttcta cttctcatct | 3800 |
tcacacttgc ccttttaaac tcatcctctc aagcccacaa cactcacatt | 3850 |
ctctttctct ccctctcggt cttcagctca aggtatagct acattcatac | 3900 |
gcatttcatt ttagggttgg ctttccaagt tgtttgtgca cttattggaa | 3950 |
gttaatataa tccttagtca cttttttgta tgtgtataga taacatagaA | 4000 |
TGGAAGATCA TTACCATCAA GTAGAAGTGG AGGGAGAAGA AGAGATCAAG | 4050 |
CCAAGCAAAG AAGCCAACAA GACAGACGAA AACACATCAT CATTAAGAAT | 4100 |
ATTCCCCTGC CTCTTTTGTT CTAGAAAGTT CCATAGCTCC CAAGCCCTAG | 4150 |
GAGGCCACCA GAACGCCCAC AAGAAGGAGC GAACCGCTGC TAGAAGAGCC | 4200 |
AAAAGGGCTT ATGATTTTGT CAACAACAAT GACTTCCTTC ACACGTTACC | 4250 |
TGTTTTCTTA TCCTCTCCCT CTCAACATCA CTTGACCATC TTAGGCTACC | 4300 |
CTGCTTCTGC CTCCGTTGCC TGTTTTCCGA CGGTTCATCC CGACCATCCG | 4350 |
ATTTTCAAAT CCAGTGGTTC TCATGTCGTG TTGGCTACAT CCCACCAAGG | 4400 |
TAGAGATTGC AAAGGAGGGT ACTGTTGTCA ACAACGTGTA GACATTTTGG | 4450 |
ATCATCATTA TAACGTGGTC AATAGTGACA AGGGTAAAGA TCAGTGTCTT | 4500 |
GATCTCTCCC TACATTTGTG Attttagcat tatcatttgt tagttatggt | 4550 |
cttgccaaaa ttgactacaa actgttccat ccgtatcctg attttaattg | 4600 |
gtattccgag aaataatgga cgatatatag tgattaaact atttgtaatt | 4650 |
cttttacgtt ttttttggtt tatcattctt gaaatctttt ggactttgta | 4700 |
catttaactt tgctaaggta cttaggttta taaaataccg atgtagagtg | 4750 |
aggttggcaa aaaaaaaaaa aaaaaaaaac gatttttttt aatttatttt | 4800 |
ttaacgacgt tgttgtgtga tatgcccaaa tcattgggcc tgtttttagg | 4850 |
ttttgaatgc agatatttgg taaatattat agttttatcc ttaagaccat | 4900 |
ctccagaaac tcatttttat aaaataatat aaattttatt attattttac | 4950 |
tgttcaaatt tttaattatt atttaaacta atcagaacaa agtaaaggta | 5000 |
gaaatgaggt tttcaaagtt tctcaggtga gaaacgtttc tcaggtgaga | 5050 |
aacgtttctg ttctttctcc tcctttttct aattttttat tctggtttaa | 5100 |
tagagagtct ctcctctaaa gactcacatt gaagatgctc taatgtttta | 5150 |
attcttttgg tcaataaaaa tttttataaa atatattaat aaaagataaa | 5200 |
acattcttac tttatatgag aaaactttaa ataacatgta attcaaaacg | 5250 |
gagagaatgt ataagataac cataggaaaa actaattaat gtgagctgaa | 5300 |
cagataatat attgatgtgg acaaaataag acctacaact taattacatt | 5350 |
acttgttaag agttttattt atttatttaa tttgttattc tcctctcaaa | 5400 |
attaatttgt aaattgagac cgaaagaaaa atggattgaa gaacactcac | 5450 |
acatgacatg atccgttgtt ggccaaactc attattgttg tcattgaata | 5500 |
tctaagcata ttgtataata ttgtttctct taattaatgt tgatcagtct | 5550 |
ggaagcctaa tcactgtcca acatgtgaaa attgatgaga cacccgaatt | 5600 |
aatatactgt ttgtacttct ggaaatagga gatcattcag attttttaat | 5650 |
tttctaattt tctaattttc taatttttgt atgcaaaatt aattagtgat | 5700 |
atgaaattta atcaaataaa agtaaaatac aaaacattac cagaaaaaaa | 5750 |
aatcttcttg attttgattc aacactatat caatgctaat gacttaatgt | 5800 |
gctaagctat tttaaaattt tcaaggattg tgtcaataat aattcatttc | 5850 |
attggtttct gactttctgc taattattat ccgataatgt aatccatgta | 5900 |
gtaattataa tagtatacaa actaatcttt tgtcaattaa ttttgtttta | 5950 |
ttcgaataat attttcttta taaacattgt tacacataat gttttagctg | 6000 |
tagattataa cttttaacgt a | 6050 |