fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G53210 SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G53210.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 108
PvuII CAG|CTG 119
SalI G|TCGAC 43, 994
SmaI CCC|GGG 918
StyI C|C[AT][AT]GG 155


Click here to view TAIR data

>AT5G53210.1 length:1095
ATGCAGGAGA TAATACCGGA TTTTCTTGAA GAGTGTGAAT TTGTCGACAC 
50
TTCACTAGCC GGAGATGATC TATTTGCCAT CTTAGAGAGT CTTGAAGGTG 
100
CCGGAGAGAT ATCTCCGACA GCTGCATCTA CACCTAAAGA TGGAACCACA 
150
AGTTCCAAGG AGTTAGTTAA GGATCAAGAT TATGAAAACT CATCTCCTAA 
200
GAGGAAAAAG CAAAGACTAG AAACCAGGAA AGAAGAGGAC GAAGAAGAAG 
250
AAGACGGAGA CGGAGAAGCA GAAGAAGATA ATAAGCAAGA TGGGCAACAA 
300
AAGATGTCTC ATGTAACCGT GGAACGTAAC CGGAGAAAGC AAATGAACGA 
350
GCACTTAACC GTTTTGCGTT CTCTTATGCC TTGTTTCTAC GTCAAACGGG 
400
GGGACCAAGC ATCGATCATA GGAGGAGTTG TGGAGTACAT AAGCGAGTTA 
450
CAACAAGTTC TCCAATCTTT GGAAGCCAAG AAACAACGTA AAACCTACGC 
500
CGAAGTCCTA AGCCCGAGAG TTGTCCCGAG CCCTCGTCCT TCACCGCCTG 
550
TTCTAAGCCC AAGAAAACCG CCTCTTAGCC CGCGCATCAA CCACCACCAG 
600
ATTCACCACC ACCTACTTCT CCCTCCCATA AGTCCTCGAA CACCTCAGCC 
650
AACAAGCCCA TACCGGGCCA TTCCACCGCA ACTACCACTC ATCCCACAGC 
700
CTCCGCTTCG CTCTTACAGC TCATTGGCCA GTTGCAGCAG CTTAGGAGAT 
750
CCACCTCCAT ACTCTCCTGC TTCATCTTCT TCATCTCCTT CAGTTAGTAG 
800
TAACCATGAG AGTAGTGTGA TCAATGAGCT TGTTGCTAAC TCAAAATCGG 
850
CTTTGGCTGA TGTGGAAGTG AAGTTTTCAG GAGCTAACGT GCTGCTCAAA 
900
ACGGTGTCGC ATAAGATCCC GGGACAAGTT ATGAAGATAA TTGCTGCTCT 
950
TGAAGATTTG GCTCTTGAGA TTCTTCAGGT TAATATTAAC ACCGTCGACG 
1000
AAACCATGCT TAATTCTTTC ACCATCAAGA TTGGAATTGA GTGCCAACTA 
1050
AGTGCAGAAG AACTGGCTCA ACAAATTCAG CAAACATTCT GCTAG
1100

>AT5G53210.1 longest ORF length:364
MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT 
50
SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ 
100
KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL 
150
QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ 
200
IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD 
250
PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK 
300
TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL 
350
SAEELAQQIQ QTFC
400