fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G54680 bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G54680.1 CDS map

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Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 178
NheI G|CTAGC 163
PvuII CAG|CTG 499
StyI C|C[AT][AT]GG 69


Click here to view TAIR data

>AT5G54680.1 length:705
ATGGTGTCAC CCGAAAACGC TAATTGGATT TGTGACTTGA TCGATGCTGA 
50
TTACGGAAGT TTCACAATCC AAGGTCCTGG TTTCTCTTGG CCTGTTCAGC 
100
AACCTATTGG TGTTTCTTCT AACTCCAGTG CTGGAGTTGA TGGCTCGGCT 
150
GGAAACTCAG AAGCTAGCAA AGAACCTGGA TCCAAAAAGA GGGGGAGATG 
200
TGAATCATCC TCTGCCACTA GCTCGAAAGC ATGTAGAGAG AAGCAGCGAC 
250
GGGACAGGTT GAATGACAAG TTTATGGAAT TGGGTGCAAT TTTGGAGCCT 
300
GGAAATCCTC CCAAAACAGA CAAGGCTGCT ATCTTGGTTG ATGCTGTCCG 
350
CATGGTGACA CAGCTACGGG GCGAGGCCCA GAAGCTGAAG GACTCCAATT 
400
CAAGTCTTCA GGACAAAATC AAAGAGTTAA AGACTGAGAA AAACGAGCTG 
450
CGAGATGAGA AACAGAGGCT GAAGACAGAG AAAGAAAAGC TGGAGCAGCA 
500
GCTGAAAGCC ATGAATGCTC CTCAACCAAG TTTTTTCCCA GCCCCACCTA 
550
TGATGCCTAC TGCTTTTGCT TCAGCGCAAG GCCAAGCTCC TGGAAACAAG 
600
ATGGTGCCAA TCATCAGTTA CCCAGGAGTT GCCATGTGGC AGTTCATGCC 
650
TCCTGCTTCA GTCGATACTT CTCAGGATCA TGTCCTTCGT CCTCCTGTTG 
700
CTTAA
750

>AT5G54680.1 longest ORF length:234
MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA 
50
GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP 
100
GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL 
150
RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK 
200
MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
250