Locus |
Common name |
Short description |
AT5G54680 |
bHLH105, ILR3 |
iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT5G54680.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
178 |
NheI
| G|CTAGC |
163 |
PvuII
| CAG|CTG |
499 |
StyI
| C|C[AT][AT]GG |
69 |
Click here to view TAIR data
>AT5G54680.1 length:705
ATGGTGTCAC CCGAAAACGC TAATTGGATT TGTGACTTGA TCGATGCTGA | 50 |
TTACGGAAGT TTCACAATCC AAGGTCCTGG TTTCTCTTGG CCTGTTCAGC | 100 |
AACCTATTGG TGTTTCTTCT AACTCCAGTG CTGGAGTTGA TGGCTCGGCT | 150 |
GGAAACTCAG AAGCTAGCAA AGAACCTGGA TCCAAAAAGA GGGGGAGATG | 200 |
TGAATCATCC TCTGCCACTA GCTCGAAAGC ATGTAGAGAG AAGCAGCGAC | 250 |
GGGACAGGTT GAATGACAAG TTTATGGAAT TGGGTGCAAT TTTGGAGCCT | 300 |
GGAAATCCTC CCAAAACAGA CAAGGCTGCT ATCTTGGTTG ATGCTGTCCG | 350 |
CATGGTGACA CAGCTACGGG GCGAGGCCCA GAAGCTGAAG GACTCCAATT | 400 |
CAAGTCTTCA GGACAAAATC AAAGAGTTAA AGACTGAGAA AAACGAGCTG | 450 |
CGAGATGAGA AACAGAGGCT GAAGACAGAG AAAGAAAAGC TGGAGCAGCA | 500 |
GCTGAAAGCC ATGAATGCTC CTCAACCAAG TTTTTTCCCA GCCCCACCTA | 550 |
TGATGCCTAC TGCTTTTGCT TCAGCGCAAG GCCAAGCTCC TGGAAACAAG | 600 |
ATGGTGCCAA TCATCAGTTA CCCAGGAGTT GCCATGTGGC AGTTCATGCC | 650 |
TCCTGCTTCA GTCGATACTT CTCAGGATCA TGTCCTTCGT CCTCCTGTTG | 700 |
CTTAA | 750 |
>AT5G54680.1 longest ORF length:234
MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA | 50 |
GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP | 100 |
GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL | 150 |
RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK | 200 |
MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA | 250 |
|