fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G54680 bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

>AT5G54680.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, BglII, NcoI, NotI, SacI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 5044
EcoRI G|AATTC 3773
EcoRV GAT|ATC 4645
HindIII A|AGCTT 828, 4544, 5060, 7039, 7391
HpaI GTT|AAC 142, 4889
KpnI GGTAC|C 517
NdeI CA|TATG 2006, 2042, 2169, 3682, 4854, 6563
NheI G|CTAGC 5029
PacI TTAAT|TAA 2963
PstI CTGCA|G 6297, 7053
PvuII CAG|CTG 5732, 6632
SalI G|TCGAC 3471
SmaI CCC|GGG 4142
SpeI A|CTAGT 5640, 7112
StyI C|C[AT][AT]GG 779, 3921, 3936, 4283, 4909, 6476
XbaI T|CTAGA 1740, 2271, 7018


Click here to view TAIR data

>AT5G54680 genomic sequence (4215-4342,4995-5057,5274-5351,5431-5593,5666-5938,) length:7719
actaaatggc catcaagatt ttcgatgaat ctttctgaca gttgaaagtt 
50
gttttctttc ttcttcagGT CTGTAGGGAA GACTCAGATG AACGAGCAAT 
100
CTTCCAGAAG CCATTTTGTT TTCACGCTAA GAATCTCTGG TGTTAACGAG 
150
gtactaacca aaccgtcttt cttcttacag aatgtttgtt ttgtgtgata 
200
aaccaaactg gcttttttct ttcttacagA GCACTGAGCA ACAAGTACAA 
250
GGTGTCTTGA ACCTGATTGA TCTTGCGGGG AGTGAGCGTT TATCGAAGAG 
300
TGGATCAACC GGAGATAGAC TTAAAGAAAC TCAAgtacgt ttgatagaaa 
350
cataaaacat gattatggtt tcttgcaatt tttagtctct taaactttca 
400
ttctttcttc agGCAATCAA CAAAAGTTTG TCGTCGCTAG GCGATGTCAT 
450
ATTCGCCTTA GCAAAGAAAG AAGATCATGT ACCATTCCGA AACTCAAAGC 
500
TCACATATCT TCTCCAGgta ccaaaccaaa ccgtaaaaac atctttcaaa 
550
acttttgttt cttgatttgt ggcatcataa taaaaactat gtttgatttt 
600
taattcagCC TTGCTTAGGC GGTGACGCAA AGACGCTAAT GTTTGTGAAC 
650
ATTGCACCGG AATCTTCTTC AACCGGTGAG TCTCTCTGCT CTCTTAGATT 
700
CGCAGCGAGA GTGAATGCTT GCGAGATTGG AACACCACGT AGGCAGACTA 
750
ACATCAAACC ATTGGAAAAT CGGTTGAGCC TTGGATGAgg gaaagaaaag 
800
agagatggat ttgaagtttg aagctaaaag cttcatttca aagttaatta 
850
tatgaatgta cttaatatgg tcacaacttg atgaagaagg atgggatgat 
900
tctaacaaga aaacatgaag accttttgtt gtaatttgta tagtttggtt 
950
tagcatttta ttatctgttg tttatgtaat tctttttctt ttggatcata 
1000
agtaggattt tgcttgttga tgttcggatt catattcatc ttctgggatt 
1050
caaaatattt acttctcgtt tctgtgacca atcaccaggc ctagaagcat 
1100
aatggtagta gtgttttggt tacgaaattg atatatgaat gattgtttat 
1150
gtttggtcag attcaatatc gtatagaaat atgaatgaaa gataataatt 
1200
aataaaacac taaaaactaa tgttagttat attttaatat gcttgtaata 
1250
tttagtactt ttcgaaaaca taaaaacgtg aaaattgact aatactataa 
1300
atagtaagaa tactggatca ttttttcaaa ccatgaaaaa gtggtatact 
1350
tttttttgtg tgcaaaatct tgtttccatt cagtagatca agtagttaca 
1400
gaaatgaata gtttagcaaa ttcaaagttt aaatcaacaa tactaaacgc 
1450
atttttgaac aacaataata aaggagatag gatatataga ccgacggtaa 
1500
gatcaaatgg tttccagaca ataggtatga accaaattgt cacatgcaag 
1550
ccaaaaagtc gatataccat ttatctttcc tttttctttc aatcaaggtg 
1600
taatcatata tatcatatat gaagcaaatt tggaaatgga aataacacat 
1650
aacagaatgg gacatgacgg cattttttgc ccactccgag gaacaatgta 
1700
ttccattgat caacttgaaa ccccacttga ttagctggtt ctagataaat 
1750
gtttgttttc tatttaggtt gttacagatt tcgtatagtt aaattgagct 
1800
acatgtacac cagataaaat caagatgttg atataagaat cattagattc 
1850
aatttgactt gaatgtggtg tgtcaattgt aaaaacaatt gtgatagggt 
1900
catactctat tttccctata actataatct tgttttgttg gacactggag 
1950
taatatatat atataattct gcaacaactt accaaaaata tttgaaatca 
2000
tggatcatat gtcatttttt ttcttccaaa aatgattttg ccatatgatt 
2050
aatgcattac gctcgtatgt ttgataaatc tggttcgtca cataaatatc 
2100
acttcgaaaa aataactttt catagttcat tatcggtaca tgtaaacgtt 
2150
aattcaatta tagtatttca tatgttccac catctcacta ttatattggt 
2200
catttgatat ttcactacta aaccagataa ctattgttct taccagattt 
2250
cacacgtaat cattgtattt tctagaacat cgaacgaata tagcctacaa 
2300
atattatatg atttagtcaa ctcctgttga atttcttcta aatattgaga 
2350
taaggtaaac taaataacat ctgaaatcat ggcaaaattc atgccttcac 
2400
ggaacttggg aaaagaacaa gtcaaacttt aaaatatttg tgtaattact 
2450
tgtttattaa catttgtttc aaaatattgt actccaaata gtcaagttga 
2500
tccataatgc cgcttctgca ttcattaatc aaactaaaag caactggctt 
2550
agccgatcat aatttcaaat aatagtagtg aagagtataa caagaagaaa 
2600
atgataatct cctatgaaaa aaataataat aattgataat ctcctttata 
2650
ttttataaaa tagaaatata gaagataaca agaaaacaag aactataaaa 
2700
atataattta gtacaaaaca agagaatata cctcacagta tgagtggata 
2750
ttcctaatca atagttgata aatctattta tttatcaatt tgggtttcgt 
2800
tatattcttg gaagaaaata agttgacgcg tataatttga gtactggttt 
2850
taaaaagaaa gaggtgctat tatataattt ggggaagata ttaaagatta 
2900
tatatcgtac ataaaagatt cttctatttt ttttctttct atttcttgga 
2950
actaccgttc ttaattaaat tacccatata ttgttaaatt ttggattttg 
3000
aacctgagat gtcgatgggc atcttatctt attatgttaa aaagttgaaa 
3050
cgaataaatg gtctcaatgc tagttgagaa gtttatactt ttagtgtgta 
3100
tcttaaaaaa aaaaaaaagt tcgtatctat gtgtatgata tattattgtt 
3150
tatcaaatgt gctaatacgt aaagtattat tggaaatttt catgtatgta 
3200
cgggaggaag cagaagaatg tataatctcc tagatcacga ccaaacgacc 
3250
attccaacca tgttctcgaa tattatcggt tcgttccaac gaacatggtc 
3300
acaagttttc tttatcaatt taatttgtta aaagctaaac ggacaaatag 
3350
aaaacacata ctactaaaac caaagaatat tgaaacaaac aaattaatca 
3400
aaaccagctt tagtggtgtt agattgatag gtctttagat tcgtgcttct 
3450
tacttattat tgctaagata gtcgacacac acaaaaagaa aaatccattc 
3500
tcttttgtta gaaaacatga atacttgcca ctataccgat tttgatttaa 
3550
aaaaacaaaa agattgttaa tggacaaatt ttgtctttct agtgcatatt 
3600
tacttaaaaa ttgaaattat taaaaaaaat ttaaaacgta tggattatat 
3650
ttgactattt gttttggaat ttaatccaaa acatatgaaa attttgaccg 
3700
tttatgaaat gttgattttt attttactct ttaactcaca cacaaaccac 
3750
atactttaaa attcgaatta gagaattcac taggttaatg ccctgattag 
3800
ttaagtttgt tgtaaaatgt attgatattt gatttaatat atatatgatg 
3850
atgtaacaca taaaataaaa taaaaacacg taaaatgaat taaaaataaa 
3900
ctaacaaata aaataaaaac ccttggtatg atgggccttg gaaagcccaa 
3950
aaaaaaagga agagtgcgcg tgaaaaccac tctaatttct ctggattcca 
4000
agattcccca attcgtctcc tccaacagtt ttcttcttct cttcttcttt 
4050
gggtgttcct tccaccaacg gcagaaatcg atttggctta aatctccccc 
4100
tcctttcgat ctctctgatc gccgccggga acattcaatt tcccgggagt 
4150
tcaacaaaaa aaaaactctc cgtttttatt tttccccctt tttcaccggt 
4200
ggaagtttcc ggagATGGTG TCACCCGAAA ACGCTAATTG GATTTGTGAC 
4250
TTGATCGATG CTGATTACGG AAGTTTCACA ATCCAAGGTC CTGGTTTCTC 
4300
TTGGCCTGTT CAGCAACCTA TTGGTGTTTC TTCTAACTCC AGgtttttct 
4350
tcttacttcc cctttctctc ttaagtgctt caaattaggg ttccgatctg 
4400
gtttttaaga aattcaaatt gatttgagtg aaatcagtgt gattgcttga 
4450
ataattttat gtgggttttt tctggtatgc gaaggtgtat cgttaaatca 
4500
agggaagggc taattttgtt aaagtaacga actttgtgat tttaagcttg 
4550
tgtgattgtt tgagtaagtt atagagaaga aactgagttc ttattcattt 
4600
gaattggttt ctatgcttaa atttgggttc ttttagcttg tgtagatatc 
4650
tttagagtgg gtgaaatgat atgttaagtt aggaagtttg gcctcaggag 
4700
aggatttagg tttgtttatc taaagtcaac tgtgtgtgcc tgacatgttt 
4750
ttagtgtaac ttctgacatg ttacttgatt cgggaattga ttgatcatat 
4800
atcacttctt gttaggtggg aattagattc ctttttcatg gatagtgctt 
4850
tcacatatga gtggatggtt tgaccttagc atgtcaatgt taactaatta 
4900
atctgcttcc ttggaagtga gtagttgtaa gttgctacat gattgagtat 
4950
agatgtaata cttagttggt tcgatgtatt tcttgttggt tcagTGCTGG 
5000
AGTTGATGGC TCGGCTGGAA ACTCAGAAGC TAGCAAAGAA CCTGGATCCA 
5050
AAAAGAGgta agctttttat gttaaactct ttgtgacaca cctttaattc 
5100
aaaagactta ctgaaccagg aaactatagc aactttcaga atctataact 
5150
ttgagaaatc gctatggaat tgtttatggt tcttttgttg tggggatctg 
5200
tattggctcg cttgacatat tttgggcttg acaaggtatc agaaaaaata 
5250
atcttgttca ttccatgtct cagGGGGAGA TGTGAATCAT CCTCTGCCAC 
5300
TAGCTCGAAA GCATGTAGAG AGAAGCAGCG ACGGGACAGG TTGAATGACA 
5350
Agtaagtttt aacaattttg tatatccttc ctttactctt tagtaggtac 
5400
taaaatgatc gccttttaaa taaataacag GTTTATGGAA TTGGGTGCAA 
5450
TTTTGGAGCC TGGAAATCCT CCCAAAACAG ACAAGGCTGC TATCTTGGTT 
5500
GATGCTGTCC GCATGGTGAC ACAGCTACGG GGCGAGGCCC AGAAGCTGAA 
5550
GGACTCCAAT TCAAGTCTTC AGGACAAAAT CAAAGAGTTA AAGgtgaaat 
5600
ttgaatcctc ctttatcccc ataaaatcat cgaatgctta ctagtttccg 
5650
gtttatgtca atcagACTGA GAAAAACGAG CTGCGAGATG AGAAACAGAG 
5700
GCTGAAGACA GAGAAAGAAA AGCTGGAGCA GCAGCTGAAA GCCATGAATG 
5750
CTCCTCAACC AAGTTTTTTC CCAGCCCCAC CTATGATGCC TACTGCTTTT 
5800
GCTTCAGCGC AAGGCCAAGC TCCTGGAAAC AAGATGGTGC CAATCATCAG 
5850
TTACCCAGGA GTTGCCATGT GGCAGTTCAT GCCTCCTGCT TCAGTCGATA 
5900
CTTCTCAGGA TCATGTCCTT CGTCCTCCTG TTGCTTAAtc aagaaaaatc 
5950
atcaaccggt ttgcttcttg cttccgctta aaagaaaagt ctccatttgt 
6000
tttgctctcc tctctttctc ggctttctta gtcttatcct tttgctttgt 
6050
cgtgttatca tcgtaactgt tatctgttga acaatgatat gacattgtaa 
6100
actccaattg cttcgcgcaa tgttatctat tcacatgtaa atttaagtag 
6150
agtttggcag atcgtctctc actttatgtg ttcttacatt aatacataga 
6200
atgtggttac ttcctcgcca taagagtttg aaagtacaaa aaattagaaa 
6250
caggagagac cgcaaaacat gatccggtag agaagtgaaa actccactgc 
6300
agaaaagttt gctcctatat cttgatctgt gaatctcctc tctgggtgcc 
6350
aatgtagaaa atggtcttgg tttgtgttaT CATGATGCTC TAATGTGACA 
6400
GCTCTTGATA AATCTGTCAG AAGAATCAAG ATACTTAGCC CAGAGAGGAC 
6450
GTAGATGAGG AAATGCTATA TCCAGCCAAG GCTTAGCTCT TCCATTGAAA 
6500
TGAACAACAG CGGCACTTTC AGCATCGGCA TAGCTCGTGG TCTCTTGGTA 
6550
TCCGAGACCA AGCATATGCC AGAACGGATC TATGGTTTGG ACATGACCGT 
6600
GGAAAGCAAT CAGCCCAGGA GGCAAAGTTC CCAGCTGCCA CAAACTCAGG 
6650
TCTGATTTTA AGTTctgcaa cacatacatg taaatagttt tgagttaaga 
6700
tgattattgc ttgatagtga ttgttgggta gttagtggtt tccttttacC 
6750
TCGTCAAGCC AATGATAGTA AGTGGAGCTT ATGTTAGTCC TCCTCCAAGC 
6800
CGCTAGGTCG AAAACATTCA TTCCATAAGC CCATGCACAT TCCTCTGGAT 
6850
TGAAGTTTTT GGCAATTGTC GGATTCGAGA AGTTGAGGTA ACTCTTGAAC 
6900
TTCTTTGACA TCACAAACTT GTCTTCTCCT CTACATGTTT CCACTGCTCC 
6950
ATTTACTTTT CCATTCATGT CAATGTCCCA AAGAGGTGAA AGATCAGTTT 
7000
GGATCACAAT GTCATCGTCT AGAAACACAA CCTTGTTTAA GCTTGGAAAC 
7050
AActgcagaa aaaagcaaag actgttatag gtttcgggtc taatgctgtt 
7100
gagtattctt cactagtcac agatcaaact tacCTCTGGT AGATGAATAC 
7150
GGATGTGATT CATCAAGGAG TTGTATTTAG GGCTGAGAGC TTGTAACTTA 
7200
GCAGCAACAA CAACCGGGTT CTCTTTGTTA TTAGCCACAA TAACCGATGA 
7250
TCCACCTCTG AATTGAGACC TCACTCTCTG ATCTTTCTCC ATAGCTTCCA 
7300
AAACGGGTAC TTTACCTTTC GATAACCAAT CGAAATGATG CAAAGCCTTG 
7350
ACCTCAATTA TTGCTGGAGA CAGAGGATGC AATGAGAACC AAGCTTGCAT 
7400
TGGGAAATAA GTTTTCCTAT CCGTTATGAT GTGAAGAACG ATCTTATGAG 
7450
GTCTTAAAGC ATTTTGAACC AACGACTTAG CCACAACCGA AGCTGCAAGA 
7500
ATATTGTCTG AAGCCAAGAC AAAGTGAAAG TAGTTGTTGT CTACCAACAT 
7550
AGGGACAAGC TCAGCTTCTG GAAGCTGGAG ACGCGCCGCT GCGTTTATCG 
7600
AGTGTTCGTT GGCTAGTTTA AGAGCTAAAC AGTGAAGTTG TTTCGGTATG 
7650
CTGCTTGATG CGACATGTCG ATATAAATAC TCTTGAATCT TAGCCGTTCT 
7700
TGTTCTCTGT TCCATCAAT
7750