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| Locus | Common name | Short description |
| AT5G58900 | Homeodomain-like transcriptional regulator (.1) |
>AT5G58900.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspEI, BspHI, BspMI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, , NarI, NcoI, NdeI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 21 |
| AccI | GT|[AC][TG]AC | 18 |
| AccII(FnuDII) | CG|CG | 516, 697 |
| AciI | C|CGC | 296, 696 |
| AflIII | A|CPuPyGT | 27 |
| AluI | AG|CT | 76, 238, 399, 444, 535, 659 |
| AlwNI | CAGNNN|CTG | 80 |
| AvaII | G|G[AT]CC | 275 |
| BanI | G|GPyPuCC | 91 |
| BanII | GPuGCPy|C | 660 |
| BfaI | C|TAG | 308, 537 |
| BsaAI | PyAC|GTPu | 28, 96 |
| BsaHI | GPu|CGPyC | 21, 70, 838 |
| BsaJI | C|CNNGG | 193, 279, 424, 706 |
| BsiEI | CGPuPy|CG | 376 |
| BsiHKAI | G[AT]GC[AT]|C | 660 |
| BslI | CCNNNNN|NNGG | 279 |
| BsmI | GAATGCN| | 130 |
| Bsp1286I | G[GAT]GC[CAT]|C | 660 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 91 |
| BsrBI | GAG|CGG | 66, 406 |
| BsrFI | Pu|CCGGPy | 262, 319, 385 |
| BsrI | ACTGGN| | 44 |
| BssKI | |CCNGG | 192, 272, 279, 351, 794 |
| BstF5I | GGATGNN| | 335 |
| BstNI | CC|[AT]GG | 794 |
| BstUI | CG|CG | 516, 697 |
| Cac8I | GCN|NGC | 319, 381, 538, 598 |
| Cfr10I | [AG]|CCGG[TC] | 262, 319, 385 |
| DdeI | C|TNAG | 61 |
| DpnI | GA-CH3|TC | 161, 390, 677 |
| DpnII | |GATC | 161, 390, 677 |
| DraI | TTT|AAA | 346 |
| EaeI | Py|GGCCPu | 792 |
| Fnu4HI | GC|NGC | 67, 75, 105, 180, 250, 296, 322, 577 |
| HaeIII | GG|CC | 259, 316, 382, 791 |
| HincII | GTPy|PuAC | 18 |
| HinfI | G|ANTC | 188, 825 |
| HpaII | C|CGG | 191, 261, 272, 279, 318, 350, 384, 395, 562, 573 |
| Hpy188I | TCN|GA | 500 |
| Hpy99I | CG[AT]CG| | 16, 71, 146 |
| HpyCH4III | ACN|GT | 14, 201, 221, 374, 618 |
| HpyCH4IV | A|CGT | 20, 27, 95, 210 |
| HpyCH4V | TG|CA | 820 |
| MboI | |GATC | 161, 390, 677 |
| MseI | T|TAA | 266, 345 |
| MspI | C|CGG | 191, 261, 272, 279, 318, 350, 384, 395, 562, 573 |
| MwoI | GCNNNNN|NNGC | 328, 543, 689 |
| NaeI | GCC|GGC | 319 |
| NciI | CC|[CG]GG | 192, 272, 279, 351 |
| NgoMIV | G|CCGGC | 319 |
| NheI | G|CTAGC | 538 |
| NlaIII | CATG| | 49 |
| NlaIV | GGN|NCC | 91, 276, 710 |
| PmeI | GTTT|AAAC | 347 |
| PmlI | CAC|GTG | 28, 96 |
| PspGI | |CC[AT]GG | 794 |
| RsaI | GT|AC | 553 |
| SacI | GAGCT|C | 660 |
| SalI | G|TCGAC | 18 |
| Sau3AI | |GATC | 161, 390, 677 |
| Sau96I | G|GNCC | 275, 316 |
| ScaI | AGT|ACT | 554 |
| ScrFI | CC|NGG | 192, 272, 279, 351, 794 |
| SfcI | C|TPuPyAG | 862 |
| StyI | C|C[AT][AT]GG | 424, 706 |
| Taqƒ¿I | T|CGA | 17, 123, 255, 627 |
| TfiI | G|A[AT]TC | 188, 825 |
| TseI | G|C[AT]GC | 75, 180, 250 |
| Tsp45I | |GT[CG]AC | 23, 208 |
| Tsp509I | |AATT | 214 |
| TspRI | NNCA[CG]TGNN| | 204 |
| XbaI | T|CTAGA | 309 |
| XcmI | CCANNNNN|NNNNTGG | 804 |
Click here to view TAIR data
>AT5G58900.1 length:867
ATGGAGGTTA TGAGACCGTC GACGTCACAC GTGTCAGGTG GGAACTGGCT | 50 |
CATGGAGGAA ACTAAGAGCG GCGTCGCAGC TTCTGGTGAA GGTGCCACGT | 100 |
GGACGGCGGC AGAGAACAAG GCATTCGAGA ATGCTTTGGC GGTTTACGAC | 150 |
GACAACACTC CTGATCGGTG GCAGAAGGTG GCTGCGGTGA TTCCGGGGAA | 200 |
GACAGTGAGT GACGTAATTA GACAGTATAA CGATTTGGAA GCTGATGTCA | 250 |
GCAGCATCGA GGCCGGTTTA ATCCCGGTCC CCGGTTACAT CACCTCGCCG | 300 |
CCTTTCACTC TAGATTGGGC CGGCGGCGGT GGCGGATGTA ACGGGTTTAA | 350 |
ACCGGGTCAT CAGGTTTGTA ATAAACGGTC GCAGGCCGGT AGATCGCCGG | 400 |
AGCTGGAGCG GAAGAAAGGC GTTCCTTGGA CGGAGGAAGA ACACAAGCTA | 450 |
TTTCTAATGG GTTTGAAGAA ATATGGGAAA GGAGATTGGA GAAACATATC | 500 |
TCGGAACTTT GTGATAACGC GAACGCCAAC ACAAGTAGCT AGCCACGCCC | 550 |
AAAAGTACTT CATCCGGCAA CTTTCCGGCG GCAAGGACAA GAGACGAGCA | 600 |
AGCATTCACG ACATAACCAC CGTAAATCTC GAAGAGGAGG CTTCTTTGGA | 650 |
GACCAATAAG AGCTCCATTG TTGTTGGAGA TCAGCGTTCA AGGCTAACCG | 700 |
CGTTTCCTTG GAACCAAACG GACAACAATG GAACACAGGC AGACGCTTTC | 750 |
AATATAACGA TTGGAAACGC TATTAGTGGC GTTCATTCAT ACGGCCAGGT | 800 |
TATGATTGGA GGGTATAACA ATGCAGATTC TTGCTATGAC GCCCAAAACA | 850 |
CAATGTTTCA ACTATAG | 900 |
>AT5G58900.1 longest ORF length:288
MEVMRPSTSH VSGGNWLMEE TKSGVAASGE GATWTAAENK AFENALAVYD | 50 |
DNTPDRWQKV AAVIPGKTVS DVIRQYNDLE ADVSSIEAGL IPVPGYITSP | 100 |
PFTLDWAGGG GGCNGFKPGH QVCNKRSQAG RSPELERKKG VPWTEEEHKL | 150 |
FLMGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ LSGGKDKRRA | 200 |
SIHDITTVNL EEEASLETNK SSIVVGDQRS RLTAFPWNQT DNNGTQADAF | 250 |
NITIGNAISG VHSYGQVMIG GYNNADSCYD AQNTMFQL | 300 |