fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G58900 Homeodomain-like transcriptional regulator (.1)

>AT5G58900.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
NheI G|CTAGC 538
SacI GAGCT|C 660
SalI G|TCGAC 18
StyI C|C[AT][AT]GG 424, 706
XbaI T|CTAGA 309


Click here to view TAIR data

>AT5G58900.1 length:867
ATGGAGGTTA TGAGACCGTC GACGTCACAC GTGTCAGGTG GGAACTGGCT 
50
CATGGAGGAA ACTAAGAGCG GCGTCGCAGC TTCTGGTGAA GGTGCCACGT 
100
GGACGGCGGC AGAGAACAAG GCATTCGAGA ATGCTTTGGC GGTTTACGAC 
150
GACAACACTC CTGATCGGTG GCAGAAGGTG GCTGCGGTGA TTCCGGGGAA 
200
GACAGTGAGT GACGTAATTA GACAGTATAA CGATTTGGAA GCTGATGTCA 
250
GCAGCATCGA GGCCGGTTTA ATCCCGGTCC CCGGTTACAT CACCTCGCCG 
300
CCTTTCACTC TAGATTGGGC CGGCGGCGGT GGCGGATGTA ACGGGTTTAA 
350
ACCGGGTCAT CAGGTTTGTA ATAAACGGTC GCAGGCCGGT AGATCGCCGG 
400
AGCTGGAGCG GAAGAAAGGC GTTCCTTGGA CGGAGGAAGA ACACAAGCTA 
450
TTTCTAATGG GTTTGAAGAA ATATGGGAAA GGAGATTGGA GAAACATATC 
500
TCGGAACTTT GTGATAACGC GAACGCCAAC ACAAGTAGCT AGCCACGCCC 
550
AAAAGTACTT CATCCGGCAA CTTTCCGGCG GCAAGGACAA GAGACGAGCA 
600
AGCATTCACG ACATAACCAC CGTAAATCTC GAAGAGGAGG CTTCTTTGGA 
650
GACCAATAAG AGCTCCATTG TTGTTGGAGA TCAGCGTTCA AGGCTAACCG 
700
CGTTTCCTTG GAACCAAACG GACAACAATG GAACACAGGC AGACGCTTTC 
750
AATATAACGA TTGGAAACGC TATTAGTGGC GTTCATTCAT ACGGCCAGGT 
800
TATGATTGGA GGGTATAACA ATGCAGATTC TTGCTATGAC GCCCAAAACA 
850
CAATGTTTCA ACTATAG
900

>AT5G58900.1 longest ORF length:288
MEVMRPSTSH VSGGNWLMEE TKSGVAASGE GATWTAAENK AFENALAVYD 
50
DNTPDRWQKV AAVIPGKTVS DVIRQYNDLE ADVSSIEAGL IPVPGYITSP 
100
PFTLDWAGGG GGCNGFKPGH QVCNKRSQAG RSPELERKKG VPWTEEEHKL 
150
FLMGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ LSGGKDKRRA 
200
SIHDITTVNL EEEASLETNK SSIVVGDQRS RLTAFPWNQT DNNGTQADAF 
250
NITIGNAISG VHSYGQVMIG GYNNADSCYD AQNTMFQL
300