Locus |
Common name |
Short description |
AT5G58900 |
|
Homeodomain-like transcriptional regulator (.1) |
>AT5G58900.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XhoI
Name |
Recognition sequence |
Cut positions |
NheI
| G|CTAGC |
538 |
SacI
| GAGCT|C |
660 |
SalI
| G|TCGAC |
18 |
StyI
| C|C[AT][AT]GG |
424, 706 |
XbaI
| T|CTAGA |
309 |
Click here to view TAIR data
>AT5G58900.1 length:867
ATGGAGGTTA TGAGACCGTC GACGTCACAC GTGTCAGGTG GGAACTGGCT | 50 |
CATGGAGGAA ACTAAGAGCG GCGTCGCAGC TTCTGGTGAA GGTGCCACGT | 100 |
GGACGGCGGC AGAGAACAAG GCATTCGAGA ATGCTTTGGC GGTTTACGAC | 150 |
GACAACACTC CTGATCGGTG GCAGAAGGTG GCTGCGGTGA TTCCGGGGAA | 200 |
GACAGTGAGT GACGTAATTA GACAGTATAA CGATTTGGAA GCTGATGTCA | 250 |
GCAGCATCGA GGCCGGTTTA ATCCCGGTCC CCGGTTACAT CACCTCGCCG | 300 |
CCTTTCACTC TAGATTGGGC CGGCGGCGGT GGCGGATGTA ACGGGTTTAA | 350 |
ACCGGGTCAT CAGGTTTGTA ATAAACGGTC GCAGGCCGGT AGATCGCCGG | 400 |
AGCTGGAGCG GAAGAAAGGC GTTCCTTGGA CGGAGGAAGA ACACAAGCTA | 450 |
TTTCTAATGG GTTTGAAGAA ATATGGGAAA GGAGATTGGA GAAACATATC | 500 |
TCGGAACTTT GTGATAACGC GAACGCCAAC ACAAGTAGCT AGCCACGCCC | 550 |
AAAAGTACTT CATCCGGCAA CTTTCCGGCG GCAAGGACAA GAGACGAGCA | 600 |
AGCATTCACG ACATAACCAC CGTAAATCTC GAAGAGGAGG CTTCTTTGGA | 650 |
GACCAATAAG AGCTCCATTG TTGTTGGAGA TCAGCGTTCA AGGCTAACCG | 700 |
CGTTTCCTTG GAACCAAACG GACAACAATG GAACACAGGC AGACGCTTTC | 750 |
AATATAACGA TTGGAAACGC TATTAGTGGC GTTCATTCAT ACGGCCAGGT | 800 |
TATGATTGGA GGGTATAACA ATGCAGATTC TTGCTATGAC GCCCAAAACA | 850 |
CAATGTTTCA ACTATAG | 900 |
>AT5G58900.1 longest ORF length:288
MEVMRPSTSH VSGGNWLMEE TKSGVAASGE GATWTAAENK AFENALAVYD | 50 |
DNTPDRWQKV AAVIPGKTVS DVIRQYNDLE ADVSSIEAGL IPVPGYITSP | 100 |
PFTLDWAGGG GGCNGFKPGH QVCNKRSQAG RSPELERKKG VPWTEEEHKL | 150 |
FLMGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ LSGGKDKRRA | 200 |
SIHDITTVNL EEEASLETNK SSIVVGDQRS RLTAFPWNQT DNNGTQADAF | 250 |
NITIGNAISG VHSYGQVMIG GYNNADSCYD AQNTMFQL | 300 |
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