Locus |
Common name |
Short description |
AT5G60850 |
OBP4, AtDof5. 4 |
OBF binding protein 4 (.1) |
>AT5G60850.1 CDS map
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Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, XbaI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
882 |
AccI
| GT|[AC][TG]AC |
561 |
AccII(FnuDII)
| CG|CG |
478 |
AciI
| C|CGC |
438, 462, 477 |
AclI
| AA|CGTT |
277, 311 |
AluI
| AG|CT |
112, 304, 425, 631 |
ApoI
| Pu|AATTPy |
536, 667 |
BamHI
| G|GATCC |
771 |
BanII
| GPuGCPy|C |
113, 426 |
BclI
| T|GATCA |
375, 684, 852 |
BfaI
| C|TAG |
414 |
BglII
| A|GATCT |
763 |
BsaAI
| PyAC|GTPu |
382 |
BsaBI
| GATNN|NNATC |
377, 686 |
BsaHI
| GPu|CGPyC |
882 |
BsaJI
| C|CNNGG |
479 |
BsiEI
| CGPuPy|CG |
587 |
BsiHKAI
| G[AT]GC[AT]|C |
113, 426 |
BslI
| CCNNNNN|NNGG |
288, 780 |
Bsp1286I
| G[GAT]GC[CAT]|C |
113, 426 |
BspHI
| T|CATGA |
12 |
BsrFI
| Pu|CCGGPy |
589 |
BsrGI
| T|GTACA |
711 |
BsrI
| ACTGGN| |
251, 863 |
BssKI
| |CCNGG |
510 |
BstBI
| TT|CGAA |
315 |
BstF5I
| GGATGNN| |
108 |
BstNI
| CC|[AT]GG |
510 |
BstUI
| CG|CG |
478 |
BstYI
| Pu|GATCPy |
406, 763, 771 |
BtgI
| C|CPuPyGG |
479 |
Cfr10I
| [AG]|CCGG[TC] |
589 |
DdeI
| C|TNAG |
214, 742 |
DpnI
| GA-CH3|TC |
98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896 |
DpnII
| |GATC |
98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896 |
EaeI
| Py|GGCCPu |
587 |
EagI
| C|GGCCG |
587 |
Fnu4HI
| GC|NGC |
82, 418, 462, 480, 716 |
HaeIII
| GG|CC |
586 |
HincII
| GTPy|PuAC |
561 |
HinfI
| G|ANTC |
76, 655, 866 |
HpaII
| C|CGG |
298, 588, 620 |
Hpy188I
| TCN|GA |
119, 286, 603, 689, 768, 773, 888, 899 |
Hpy99I
| CG[AT]CG| |
243, 284, 334, 361, 458, 499, 562, 883 |
HpyCH4III
| ACN|GT |
238, 456, 541, 647, 708, 722, 791, 827, 846 |
HpyCH4IV
| A|CGT |
276, 310, 381, 563, 881 |
HpyCH4V
| TG|CA |
0, 230, 856 |
MboI
| |GATC |
98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896 |
MseI
| T|TAA |
132, 174, 836 |
MspA1I
| C[AC]G|C[GT]G |
479 |
MspI
| C|CGG |
298, 588, 620 |
MwoI
| GCNNNNN|NNGC |
424, 492, 630 |
N.BstNBI
| GAGTCNNNN|N |
871 |
NlaIII
| CATG| |
11, 22, 854 |
NlaIV
| GGN|NCC |
330, 771 |
NsiI
| ATGCA|T |
857 |
PflFI
| GACN|NNGTC |
885 |
PmlI
| CAC|GTG |
382 |
PspGI
| |CC[AT]GG |
510 |
RsaI
| GT|AC |
399, 710, 843 |
SacI
| GAGCT|C |
113, 426 |
SacII
| CCGC|GG |
479 |
SalI
| G|TCGAC |
561 |
Sau3AI
| |GATC |
98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896 |
ScrFI
| CC|NGG |
510 |
SmlI
| C|TPyPuAG |
151 |
Taqƒ¿I
| T|CGA |
100, 314, 395, 552, 560, 733 |
TfiI
| G|A[AT]TC |
76, 655 |
TseI
| G|C[AT]GC |
418, 716 |
Tsp45I
| |GT[CG]AC |
223, 474 |
Tsp509I
| |AATT |
167, 200, 535, 666 |
TspRI
| NNCA[CG]TGNN| |
828 |
Tth111I
| GACN|NNGTC |
885 |
XcmI
| CCANNNNN|NNNNTGG |
903 |
XmnI
| GAANN|NNTTC |
765 |
Click here to view TAIR data
>AT5G60850.1 length:924
ATGCAAGATA TTCATGATTT CTCCATGAAC GGAGTTGGTG GTGGGGGAGG | 50 |
AGGAGGAGGG AGGTTTTTCG GTGGAGGAAT CGGCGGCGGA GGAGGTGGTG | 100 |
ATCGAAGGAT GAGAGCTCAT CAGAACAATA TACTTAACCA TCATCAATCT | 150 |
CTCAAGTGTC CTCGTTGTAA TTCTCTTAAC ACAAAGTTCT GTTACTACAA | 200 |
CAATTACAAT CTTTCTCAGC CTCGTCACTT TTGCAAGAAC TGTCGTCGTT | 250 |
ACTGGACTAA AGGTGGTGTT CTCCGTAACG TTCCCGTCGG AGGTGGTTGC | 300 |
CGGAAAGCTA AACGTTCGAA AACAAAACAG GTTCCGTCGT CGTCATCAGC | 350 |
CGACAAACCA ACGACGACGC AAGATGATCA TCACGTGGAG GAGAAATCGA | 400 |
GTACAGGATC TCACTCTAGC AGCGAGAGCT CTTCTCTCAC CGCTTCTAAC | 450 |
TCTACCACCG TCGCCGCCGT CTCCGTCACC GCGGCGGCGG AAGTTGCTTC | 500 |
GTCGGTTATT CCAGGTTTTG ATATGCCTAA TATGAAAATT TACGGTAACG | 550 |
GGATCGAGTG GTCGACGTTA CTTGGACAAG GCTCATCGGC CGGTGGTGTT | 600 |
TTCTCGGAGA TCGGTGGTTT TCCGGCGGTT TCAGCTATTG AAACTACACC | 650 |
GTTTGGATTC GGGGGTAAAT TCGTAAATCA AGATGATCAT CTGAAGTTAG | 700 |
AAGGTGAAAC TGTACAGCAG CAACAGTTTG GAGATCGAAC GGCTCAGGTT | 750 |
GAGTTTCAAG GAAGATCTTC GGATCCGAAT ATGGGATTTG AACCGTTGGA | 800 |
TTGGGGAAGT GGCGGTGGAG ATCAAACACT GTTTGATTTA ACCAGTACCG | 850 |
TTGATCATGC ATACTGGAGT CAAAGTCAAT GGACGTCGTC TGACCAAGAT | 900 |
CAGAGTGGTC TCTACCTTCC TTGA | 950 |
>AT5G60850.1 longest ORF length:307
MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS | 50 |
LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC | 100 |
RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN | 150 |
STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV | 200 |
FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV | 250 |
EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD | 300 |
QSGLYLP | 350 |
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