fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G60850 OBP4, AtDof5. 4 OBF binding protein 4 (.1)

>AT5G60850.1 CDS map

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Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 882
AccI GT|[AC][TG]AC 561
AccII(FnuDII) CG|CG 478
AciI C|CGC 438, 462, 477
AclI AA|CGTT 277, 311
AluI AG|CT 112, 304, 425, 631
ApoI Pu|AATTPy 536, 667
BamHI G|GATCC 771
BanII GPuGCPy|C 113, 426
BclI T|GATCA 375, 684, 852
BfaI C|TAG 414
BglII A|GATCT 763
BsaAI PyAC|GTPu 382
BsaBI GATNN|NNATC 377, 686
BsaHI GPu|CGPyC 882
BsaJI C|CNNGG 479
BsiEI CGPuPy|CG 587
BsiHKAI G[AT]GC[AT]|C 113, 426
BslI CCNNNNN|NNGG 288, 780
Bsp1286I G[GAT]GC[CAT]|C 113, 426
BspHI T|CATGA 12
BsrFI Pu|CCGGPy 589
BsrGI T|GTACA 711
BsrI ACTGGN| 251, 863
BssKI |CCNGG 510
BstBI TT|CGAA 315
BstF5I GGATGNN| 108
BstNI CC|[AT]GG 510
BstUI CG|CG 478
BstYI Pu|GATCPy 406, 763, 771
BtgI C|CPuPyGG 479
Cfr10I [AG]|CCGG[TC] 589
DdeI C|TNAG 214, 742
DpnI GA-CH3|TC 98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896
DpnII |GATC 98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896
EaeI Py|GGCCPu 587
EagI C|GGCCG 587
Fnu4HI GC|NGC 82, 418, 462, 480, 716
HaeIII GG|CC 586
HincII GTPy|PuAC 561
HinfI G|ANTC 76, 655, 866
HpaII C|CGG 298, 588, 620
Hpy188I TCN|GA 119, 286, 603, 689, 768, 773, 888, 899
Hpy99I CG[AT]CG| 243, 284, 334, 361, 458, 499, 562, 883
HpyCH4III ACN|GT 238, 456, 541, 647, 708, 722, 791, 827, 846
HpyCH4IV A|CGT 276, 310, 381, 563, 881
HpyCH4V TG|CA 0, 230, 856
MboI |GATC 98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896
MseI T|TAA 132, 174, 836
MspA1I C[AC]G|C[GT]G 479
MspI C|CGG 298, 588, 620
MwoI GCNNNNN|NNGC 424, 492, 630
N.BstNBI GAGTCNNNN|N 871
NlaIII CATG| 11, 22, 854
NlaIV GGN|NCC 330, 771
NsiI ATGCA|T 857
PflFI GACN|NNGTC 885
PmlI CAC|GTG 382
PspGI |CC[AT]GG 510
RsaI GT|AC 399, 710, 843
SacI GAGCT|C 113, 426
SacII CCGC|GG 479
SalI G|TCGAC 561
Sau3AI |GATC 98, 374, 405, 550, 607, 683, 731, 762, 770, 818, 851, 896
ScrFI CC|NGG 510
SmlI C|TPyPuAG 151
Taqƒ¿I T|CGA 100, 314, 395, 552, 560, 733
TfiI G|A[AT]TC 76, 655
TseI G|C[AT]GC 418, 716
Tsp45I |GT[CG]AC 223, 474
Tsp509I |AATT 167, 200, 535, 666
TspRI NNCA[CG]TGNN| 828
Tth111I GACN|NNGTC 885
XcmI CCANNNNN|NNNNTGG 903
XmnI GAANN|NNTTC 765


Click here to view TAIR data

>AT5G60850.1 length:924
ATGCAAGATA TTCATGATTT CTCCATGAAC GGAGTTGGTG GTGGGGGAGG 
50
AGGAGGAGGG AGGTTTTTCG GTGGAGGAAT CGGCGGCGGA GGAGGTGGTG 
100
ATCGAAGGAT GAGAGCTCAT CAGAACAATA TACTTAACCA TCATCAATCT 
150
CTCAAGTGTC CTCGTTGTAA TTCTCTTAAC ACAAAGTTCT GTTACTACAA 
200
CAATTACAAT CTTTCTCAGC CTCGTCACTT TTGCAAGAAC TGTCGTCGTT 
250
ACTGGACTAA AGGTGGTGTT CTCCGTAACG TTCCCGTCGG AGGTGGTTGC 
300
CGGAAAGCTA AACGTTCGAA AACAAAACAG GTTCCGTCGT CGTCATCAGC 
350
CGACAAACCA ACGACGACGC AAGATGATCA TCACGTGGAG GAGAAATCGA 
400
GTACAGGATC TCACTCTAGC AGCGAGAGCT CTTCTCTCAC CGCTTCTAAC 
450
TCTACCACCG TCGCCGCCGT CTCCGTCACC GCGGCGGCGG AAGTTGCTTC 
500
GTCGGTTATT CCAGGTTTTG ATATGCCTAA TATGAAAATT TACGGTAACG 
550
GGATCGAGTG GTCGACGTTA CTTGGACAAG GCTCATCGGC CGGTGGTGTT 
600
TTCTCGGAGA TCGGTGGTTT TCCGGCGGTT TCAGCTATTG AAACTACACC 
650
GTTTGGATTC GGGGGTAAAT TCGTAAATCA AGATGATCAT CTGAAGTTAG 
700
AAGGTGAAAC TGTACAGCAG CAACAGTTTG GAGATCGAAC GGCTCAGGTT 
750
GAGTTTCAAG GAAGATCTTC GGATCCGAAT ATGGGATTTG AACCGTTGGA 
800
TTGGGGAAGT GGCGGTGGAG ATCAAACACT GTTTGATTTA ACCAGTACCG 
850
TTGATCATGC ATACTGGAGT CAAAGTCAAT GGACGTCGTC TGACCAAGAT 
900
CAGAGTGGTC TCTACCTTCC TTGA
950

>AT5G60850.1 longest ORF length:307
MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS 
50
LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC 
100
RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN 
150
STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV 
200
FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV 
250
EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD 
300
QSGLYLP
350