fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G60850 (OBP4, AtDof5. 4)

Alias OBP4, AtDof5. 4
TF Classification
FioreDBDOF (Click to show phylogenetic tree)
RARTFC2C2(Zn) / Dof
AtTFDBC2C2-Dof
PlnTFDBC2C2-Dof (v3.0), C2C2-Dof (v1.0)
DATFC2C2-Dof
TAIR short description OBF binding protein 4 (.1)
TAIR annotation Encodes a zinc finger protein. (.1)
Gene model
Gene model cDNA support
AT5G60850.1 64
Entry clone (w/o stop) RE_0490
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN139: 3'-TGAAGATGTTCTTGACAGCAT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum
physcomitrella
Total 3 3
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

         too many rosettes (direct input), 
         abnormal stem (direct input), 
         adventitious shoot formation (direct input), 
         slow growth (direct input), 
         long petiole (direct input), 
         short stamen (direct input), 
         abnormal seedling (direct input), 
         pollen defective (direct input), 
         abnormal carpel (direct input), 
         late flowering (direct input), 
         abnormal petal (direct input), 
         non-rosette growth (direct input), 
         narrow leaf (direct input), 
         abnormal flower (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         abnormal leaf 
         (A20266-175)
         

         
         

         late flowering, 
         long petiole 
         (A20265-150)
         

         
         
         

         non-rosette growth, 
         abnormal leaf 
         (A20215-252)
         

         late flowering, 
         long petiole 
         (A20265-146)
         

         
         
         

         long petiole 
         (A20265-151)
         

         slow growth, 
         short petiole 
         (A20584-52)
         

         late flowering, 
         long petiole 
         (A20265-145)
         

         
         
         

         narrow leaf 
         (A20211-203)
         

         late flowering, 
         too many rosettes 
         (A20586-174)
         

         too many rosettes 
         (A20263-32)
         

         
         
         

         late flowering, 
         long petiole 
         (A20265-149)
         

         
         
         


        		
       

       

        Phenotype in ornamental plants


        
         

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