Locus |
Common name |
Short description |
AT5G61850 |
LFY3, LFY |
LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1) |
>AT5G61850.1 CDS map
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Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, Bsu36I, BtrI, BtsI, ClaI, DraIII, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PpuMI, PsiI, PspOMI, PvuI, PvuII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
600, 622, 1218 |
AccI
| GT|[AC][TG]AC |
170, 1215 |
AccII(FnuDII)
| CG|CG |
874, 995 |
AciI
| C|CGC |
83, 107, 402 |
AclI
| AA|CGTT |
1006 |
AgeI
| A|CCGGT |
471 |
AluI
| AG|CT |
246, 291, 322, 334, 961, 1128, 1137, 1199 |
AvaII
| G|G[AT]CC |
159, 806 |
BamHI
| G|GATCC |
3 |
BfaI
| C|TAG |
378, 950, 1258 |
BsaAI
| PyAC|GTPu |
737 |
BsaHI
| GPu|CGPyC |
383, 600, 622, 1019, 1078, 1218 |
BsaJI
| C|CNNGG |
724, 828, 848 |
BsaWI
| [AT]|CCGG[AT] |
32, 72, 418, 471, 1207 |
BsiHKAI
| G[AT]GC[AT]|C |
219 |
BsiWI
| C|GTACG |
164 |
BslI
| CCNNNNN|NNGG |
454, 803, 848 |
Bsp1286I
| G[GAT]GC[CAT]|C |
219 |
BsrBI
| GAG|CGG |
1153 |
BsrFI
| Pu|CCGGPy |
99, 471 |
BsrI
| ACTGGN| |
533 |
BssKI
| |CCNGG |
723 |
BstF5I
| GGATGNN| |
129, 640, 651, 1235 |
BstNI
| CC|[AT]GG |
723 |
BstUI
| CG|CG |
874, 995 |
BstYI
| Pu|GATCPy |
3 |
BstZ17I
| GTA|TAC |
170 |
BtgI
| C|CPuPyGG |
828 |
Cac8I
| GCN|NGC |
217 |
Cfr10I
| [AG]|CCGG[TC] |
99, 471 |
DdeI
| C|TNAG |
463, 755, 975 |
DpnI
| GA-CH3|TC |
2, 1209 |
DpnII
| |GATC |
2, 1209 |
DraI
| TTT|AAA |
988 |
DrdI
| GACNNNN|NNGTC |
158, 622 |
EcoNI
| CCTNN|NNNAGG |
803 |
Fnu4HI
| GC|NGC |
86, 117, 186, 324, 405, 476, 498, 569, 1130, 1170, 1176, 1237 |
HincII
| GTPy|PuAC |
625, 1215 |
HindIII
| A|AGCTT |
962 |
HinfI
| G|ANTC |
372, 414 |
HpaII
| C|CGG |
31, 71, 98, 417, 470, 1206 |
Hpy188I
| TCN|GA |
462, 976 |
Hpy99I
| CG[AT]CG| |
614, 644, 1213, 1244 |
HpyCH4III
| ACN|GT |
166, 308, 313, 826, 931 |
HpyCH4IV
| A|CGT |
172, 599, 621, 736, 924, 1005, 1217, 1225 |
HpyCH4V
| TG|CA |
87, 351, 474 |
MboI
| |GATC |
2, 1209 |
MfeI
| C|AATTG |
815 |
MseI
| T|TAA |
987, 1086 |
MslI
| CAPyNN|NNPuTG |
226, 850 |
MspA1I
| C[AC]G|C[GT]G |
85, 407 |
MspI
| C|CGG |
31, 71, 98, 417, 470, 1206 |
MwoI
| GCNNNNN|NNGC |
95, 195, 333, 438, 569, 838, 914, 969, 1136, 1170, 1198 |
NlaIII
| CATG| |
1014, 1061 |
NlaIV
| GGN|NCC |
3, 38, 75, 468, 720 |
PflFI
| GACN|NNGTC |
386, 1081 |
PmlI
| CAC|GTG |
737 |
PshAI
| GACNN|NNGTC |
542 |
PspGI
| |CC[AT]GG |
723 |
PstI
| CTGCA|G |
88 |
RsaI
| GT|AC |
163, 310, 420, 775, 871, 1203 |
RsrII
| CG|G[AT]CCG |
160 |
SalI
| G|TCGAC |
1215 |
Sau3AI
| |GATC |
2, 1209 |
Sau96I
| G|GNCC |
159, 806 |
ScrFI
| CC|NGG |
723 |
SfcI
| C|TPuPyAG |
88 |
StyI
| C|C[AT][AT]GG |
848 |
Taqƒ¿I
| T|CGA |
1214 |
TfiI
| G|A[AT]TC |
372, 414 |
TseI
| G|C[AT]GC |
86, 117, 324, 476, 569, 1130, 1170, 1176 |
Tsp45I
| |GT[CG]AC |
102, 852 |
Tsp509I
| |AATT |
814 |
TspRI
| NNCA[CG]TGNN| |
606, 932, 947 |
Tth111I
| GACN|NNGTC |
386, 1081 |
XbaI
| T|CTAGA |
379 |
Click here to view TAIR data
>AT5G61850.1 length:1263
ATGGATCCTG AAGGTTTCAC GAGTGGCTTA TTCCGGTGGA ACCCAACGAG | 50 |
AGCATTGGTT CAAGCACCAC CTCCGGTTCC ACCTCCGCTG CAGCAACAGC | 100 |
CGGTGACACC GCAGACGGCT GCTTTTGGGA TGCGACTTGG TGGTTTAGAG | 150 |
GGACTATTCG GTCCGTACGG TATACGTTTC TACACGGCGG CGAAGATAGC | 200 |
GGAGTTAGGT TTTACGGCGA GCACGCTTGT GGGTATGAAG GACGAGGAGC | 250 |
TTGAAGAGAT GATGAATAGT CTCTCTCATA TCTTTCGTTG GGAGCTTCTT | 300 |
GTTGGTGAAC GGTACGGTAT CAAAGCTGCC GTTAGAGCTG AACGGAGACG | 350 |
ATTGCAAGAA GAGGAGGAAG AGGAATCTTC TAGACGCCGT CATTTGCTAC | 400 |
TCTCCGCCGC TGGTGATTCC GGTACTCATC ACGCTCTTGA TGCTCTCTCC | 450 |
CAAGAAGGGT TATCTGAGGA ACCGGTGCAG CAACAAGACC AGACTGATGC | 500 |
GGCGGGGAAT AACGGCGGAG GAGGAAGTGG TTACTGGGAC GCAGGTCAAG | 550 |
GAAAGATGAA GAAGCAACAG CAGCAGAGAC GGAGAAAGAA ACCAATGCTG | 600 |
ACGTCAGTGG AAACCGACGA AGACGTCAAC GAAGGTGAGG ATGACGACGG | 650 |
GATGGATAAC GGCAACGGAG GTAGTGGTTT GGGGACAGAG AGACAGAGGG | 700 |
AGCATCCGTT TATCGTAACG GAGCCTGGGG AAGTGGCACG TGGCAAAAAG | 750 |
AACGGCTTAG ATTATCTGTT CCACTTGTAC GAACAATGCC GTGAGTTCCT | 800 |
TCTTCAGGTC CAGACAATTG CTAAAGACCG TGGCGAAAAA TGCCCCACCA | 850 |
AGGTGACGAA CCAAGTATTC AGGTACGCGA AGAAATCAGG AGCGAGTTAC | 900 |
ATAAACAAGC CTAAAATGCG ACACTACGTT CACTGTTACG CTCTCCACTG | 950 |
CCTAGACGAA GAAGCTTCAA ATGCTCTCAG AAGAGCGTTT AAAGAACGCG | 1000 |
GTGAGAACGT TGGCTCATGG CGTCAGGCTT GTTACAAGCC ACTTGTGAAC | 1050 |
ATCGCTTGTC GTCATGGCTG GGATATAGAC GCCGTCTTTA ACGCTCATCC | 1100 |
TCGTCTCTCT ATTTGGTATG TTCCAACAAA GCTGCGTCAG CTTTGCCATT | 1150 |
TGGAGCGGAA CAATGCGGTT GCTGCGGCTG CGGCTTTAGT TGGCGGTATT | 1200 |
AGCTGTACCG GATCGTCGAC GTCTGGACGT GGTGGATGCG GCGGCGACGA | 1250 |
CTTGCGTTTC TAG | 1300 |
>AT5G61850.1 longest ORF length:420
MDPEGFTSGL FRWNPTRALV QAPPPVPPPL QQQPVTPQTA AFGMRLGGLE | 50 |
GLFGPYGIRF YTAAKIAELG FTASTLVGMK DEELEEMMNS LSHIFRWELL | 100 |
VGERYGIKAA VRAERRRLQE EEEEESSRRR HLLLSAAGDS GTHHALDALS | 150 |
QEGLSEEPVQ QQDQTDAAGN NGGGGSGYWD AGQGKMKKQQ QQRRRKKPML | 200 |
TSVETDEDVN EGEDDDGMDN GNGGSGLGTE RQREHPFIVT EPGEVARGKK | 250 |
NGLDYLFHLY EQCREFLLQV QTIAKDRGEK CPTKVTNQVF RYAKKSGASY | 300 |
INKPKMRHYV HCYALHCLDE EASNALRRAF KERGENVGSW RQACYKPLVN | 350 |
IACRHGWDID AVFNAHPRLS IWYVPTKLRQ LCHLERNNAV AAAAALVGGI | 400 |
SCTGSSTSGR GGCGGDDLRF | 450 |
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