fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G61850 LFY3, LFY LEAFY 3, floral meristem identity control protein LEAFY (LFY) (.1)

>AT5G61850.1 CDS map

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Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, Bsu36I, BtrI, BtsI, ClaI, DraIII, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PpuMI, PsiI, PspOMI, PvuI, PvuII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 600, 622, 1218
AccI GT|[AC][TG]AC 170, 1215
AccII(FnuDII) CG|CG 874, 995
AciI C|CGC 83, 107, 402
AclI AA|CGTT 1006
AgeI A|CCGGT 471
AluI AG|CT 246, 291, 322, 334, 961, 1128, 1137, 1199
AvaII G|G[AT]CC 159, 806
BamHI G|GATCC 3
BfaI C|TAG 378, 950, 1258
BsaAI PyAC|GTPu 737
BsaHI GPu|CGPyC 383, 600, 622, 1019, 1078, 1218
BsaJI C|CNNGG 724, 828, 848
BsaWI [AT]|CCGG[AT] 32, 72, 418, 471, 1207
BsiHKAI G[AT]GC[AT]|C 219
BsiWI C|GTACG 164
BslI CCNNNNN|NNGG 454, 803, 848
Bsp1286I G[GAT]GC[CAT]|C 219
BsrBI GAG|CGG 1153
BsrFI Pu|CCGGPy 99, 471
BsrI ACTGGN| 533
BssKI |CCNGG 723
BstF5I GGATGNN| 129, 640, 651, 1235
BstNI CC|[AT]GG 723
BstUI CG|CG 874, 995
BstYI Pu|GATCPy 3
BstZ17I GTA|TAC 170
BtgI C|CPuPyGG 828
Cac8I GCN|NGC 217
Cfr10I [AG]|CCGG[TC] 99, 471
DdeI C|TNAG 463, 755, 975
DpnI GA-CH3|TC 2, 1209
DpnII |GATC 2, 1209
DraI TTT|AAA 988
DrdI GACNNNN|NNGTC 158, 622
EcoNI CCTNN|NNNAGG 803
Fnu4HI GC|NGC 86, 117, 186, 324, 405, 476, 498, 569, 1130, 1170, 1176, 1237
HincII GTPy|PuAC 625, 1215
HindIII A|AGCTT 962
HinfI G|ANTC 372, 414
HpaII C|CGG 31, 71, 98, 417, 470, 1206
Hpy188I TCN|GA 462, 976
Hpy99I CG[AT]CG| 614, 644, 1213, 1244
HpyCH4III ACN|GT 166, 308, 313, 826, 931
HpyCH4IV A|CGT 172, 599, 621, 736, 924, 1005, 1217, 1225
HpyCH4V TG|CA 87, 351, 474
MboI |GATC 2, 1209
MfeI C|AATTG 815
MseI T|TAA 987, 1086
MslI CAPyNN|NNPuTG 226, 850
MspA1I C[AC]G|C[GT]G 85, 407
MspI C|CGG 31, 71, 98, 417, 470, 1206
MwoI GCNNNNN|NNGC 95, 195, 333, 438, 569, 838, 914, 969, 1136, 1170, 1198
NlaIII CATG| 1014, 1061
NlaIV GGN|NCC 3, 38, 75, 468, 720
PflFI GACN|NNGTC 386, 1081
PmlI CAC|GTG 737
PshAI GACNN|NNGTC 542
PspGI |CC[AT]GG 723
PstI CTGCA|G 88
RsaI GT|AC 163, 310, 420, 775, 871, 1203
RsrII CG|G[AT]CCG 160
SalI G|TCGAC 1215
Sau3AI |GATC 2, 1209
Sau96I G|GNCC 159, 806
ScrFI CC|NGG 723
SfcI C|TPuPyAG 88
StyI C|C[AT][AT]GG 848
Taqƒ¿I T|CGA 1214
TfiI G|A[AT]TC 372, 414
TseI G|C[AT]GC 86, 117, 324, 476, 569, 1130, 1170, 1176
Tsp45I |GT[CG]AC 102, 852
Tsp509I |AATT 814
TspRI NNCA[CG]TGNN| 606, 932, 947
Tth111I GACN|NNGTC 386, 1081
XbaI T|CTAGA 379


Click here to view TAIR data

>AT5G61850.1 length:1263
ATGGATCCTG AAGGTTTCAC GAGTGGCTTA TTCCGGTGGA ACCCAACGAG 
50
AGCATTGGTT CAAGCACCAC CTCCGGTTCC ACCTCCGCTG CAGCAACAGC 
100
CGGTGACACC GCAGACGGCT GCTTTTGGGA TGCGACTTGG TGGTTTAGAG 
150
GGACTATTCG GTCCGTACGG TATACGTTTC TACACGGCGG CGAAGATAGC 
200
GGAGTTAGGT TTTACGGCGA GCACGCTTGT GGGTATGAAG GACGAGGAGC 
250
TTGAAGAGAT GATGAATAGT CTCTCTCATA TCTTTCGTTG GGAGCTTCTT 
300
GTTGGTGAAC GGTACGGTAT CAAAGCTGCC GTTAGAGCTG AACGGAGACG 
350
ATTGCAAGAA GAGGAGGAAG AGGAATCTTC TAGACGCCGT CATTTGCTAC 
400
TCTCCGCCGC TGGTGATTCC GGTACTCATC ACGCTCTTGA TGCTCTCTCC 
450
CAAGAAGGGT TATCTGAGGA ACCGGTGCAG CAACAAGACC AGACTGATGC 
500
GGCGGGGAAT AACGGCGGAG GAGGAAGTGG TTACTGGGAC GCAGGTCAAG 
550
GAAAGATGAA GAAGCAACAG CAGCAGAGAC GGAGAAAGAA ACCAATGCTG 
600
ACGTCAGTGG AAACCGACGA AGACGTCAAC GAAGGTGAGG ATGACGACGG 
650
GATGGATAAC GGCAACGGAG GTAGTGGTTT GGGGACAGAG AGACAGAGGG 
700
AGCATCCGTT TATCGTAACG GAGCCTGGGG AAGTGGCACG TGGCAAAAAG 
750
AACGGCTTAG ATTATCTGTT CCACTTGTAC GAACAATGCC GTGAGTTCCT 
800
TCTTCAGGTC CAGACAATTG CTAAAGACCG TGGCGAAAAA TGCCCCACCA 
850
AGGTGACGAA CCAAGTATTC AGGTACGCGA AGAAATCAGG AGCGAGTTAC 
900
ATAAACAAGC CTAAAATGCG ACACTACGTT CACTGTTACG CTCTCCACTG 
950
CCTAGACGAA GAAGCTTCAA ATGCTCTCAG AAGAGCGTTT AAAGAACGCG 
1000
GTGAGAACGT TGGCTCATGG CGTCAGGCTT GTTACAAGCC ACTTGTGAAC 
1050
ATCGCTTGTC GTCATGGCTG GGATATAGAC GCCGTCTTTA ACGCTCATCC 
1100
TCGTCTCTCT ATTTGGTATG TTCCAACAAA GCTGCGTCAG CTTTGCCATT 
1150
TGGAGCGGAA CAATGCGGTT GCTGCGGCTG CGGCTTTAGT TGGCGGTATT 
1200
AGCTGTACCG GATCGTCGAC GTCTGGACGT GGTGGATGCG GCGGCGACGA 
1250
CTTGCGTTTC TAG
1300

>AT5G61850.1 longest ORF length:420
MDPEGFTSGL FRWNPTRALV QAPPPVPPPL QQQPVTPQTA AFGMRLGGLE 
50
GLFGPYGIRF YTAAKIAELG FTASTLVGMK DEELEEMMNS LSHIFRWELL 
100
VGERYGIKAA VRAERRRLQE EEEEESSRRR HLLLSAAGDS GTHHALDALS 
150
QEGLSEEPVQ QQDQTDAAGN NGGGGSGYWD AGQGKMKKQQ QQRRRKKPML 
200
TSVETDEDVN EGEDDDGMDN GNGGSGLGTE RQREHPFIVT EPGEVARGKK 
250
NGLDYLFHLY EQCREFLLQV QTIAKDRGEK CPTKVTNQVF RYAKKSGASY 
300
INKPKMRHYV HCYALHCLDE EASNALRRAF KERGENVGSW RQACYKPLVN 
350
IACRHGWDID AVFNAHPRLS IWYVPTKLRQ LCHLERNNAV AAAAALVGGI 
400
SCTGSSTSGR GGCGGDDLRF 
450