fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G65410 ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1)

>AT5G65410.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 647
KpnI GGTAC|C 310
PvuII CAG|CTG 296, 548


Click here to view TAIR data

>AT5G65410.1 length:840
ATGGAGTTTG AAGACAACAA CAACAACAAC GACGAAGAGC AAGAAGAGGA 
50
TATGAATCTT CATGAGGAAG AAGAAGACGA CGACGCCGTT TACGACTCTC 
100
CTCCTCTCTC TCGTGTTCTC CCCAAAGCCT CGACAGAAAG TCATGAAACC 
150
ACCGGAACTA CTTCCACAGG CGGTGGCGGA GGATTCATGG TTGTTCACGG 
200
CGGTGGAGGG AGCAGGTTTA GGTTCCGTGA GTGTCTCAAG AACCAAGCGG 
250
TGAACATAGG AGGACACGCG GTCGATGGTT GTGGTGAGTT TATGCCAGCT 
300
GGAATCGAAG GTACCATCGA CGCTCTAAAA TGCGCCGCTT GTGGCTGTCA 
350
CCGTAACTTC CACCGCAAGG AATTACCTTA CTTCCATCAC GCGCCGCCAC 
400
AACATCAGCC TCCTCCTCCC CCGCCAGGGT TTTACCGTCT TCCAGCTCCG 
450
GTTAGCTACC GACCACCACC GTCACAAGCT CCTCCTCTTC AGCTCGCTCT 
500
TCCCCCTCCA CAAAGAGAGA GATCAGAAGA TCCAATGGAG ACGTCTTCAG 
550
CTGAAGCAGG AGGAGGGATT AGGAAGAGGC ATAGGACTAA GTTTACGGCT 
600
GAGCAAAAGG AAAGGATGTT AGCTTTAGCT GAGAGGATTG GATGGAGAAT 
650
TCAGAGACAA GACGATGAAG TGATTCAGAG ATTTTGTCAG GAGACTGGTG 
700
TTCCGAGACA AGTTCTTAAG GTTTGGTTAC ATAACAACAA ACACACTCTT 
750
GGTAAGTCGC CTTCACCACT TCATCATCAT CAGGCTCCTC CTCCTCCACC 
800
ACCACAGTCT TCGTTTCATC ATGAACAAGA CCAACCATGA 
850

>AT5G65410.1 longest ORF length:279
MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET 
50
TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA 
100
GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP 
150
VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA 
200
EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL 
250
GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
300