fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G66940 AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1)

>AT5G66940.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BsrBI, BssHII, BssSI, BstAPI, BstEII, BstUI, Bsu36I, DraIII, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PflFI, PflMI, PleI, PmeI, PshAI, PspOMI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, StuI, SwaI, Tth111I, XcmI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 4520
AccI GT|[AC][TG]AC 873, 1467, 2419, 2612, 3454
AciI C|CGC 2298, 4279, 4432, 4609, 6030
AclI AA|CGTT 4257, 4825, 5860
AflIII A|CPuPyGT 669, 1845, 2616, 2639, 3413, 3458, 3546, 3693
AgeI A|CCGGT 2573
AluI AG|CT 6, 63, 75, 267, 296, 414, 837, 974, 1386, 1989, 2711, 2981, 3393, 3771, 3853, 3953, 4090, 4248, 4322, 4410, 4693, 4739, 5190, 6160
ApoI Pu|AATTPy 566, 739, 850, 908, 1127, 1380, 1556, 1863, 2556, 2923, 3476, 3539, 3573, 4010, 4931, 5114, 5420
AseI AT|TAAT 925, 1144, 1360
AvaI C|PyCGPuG 6121
AvaII G|G[AT]CC 1720, 2408, 2446, 3177, 3222, 3270, 5604
BalI TGG|CCA 561, 5137
BamHI G|GATCC 675
BanI G|GPyPuCC 1894
BanII GPuGCPy|C 631, 1387, 3333
BclI T|GATCA 4419, 5586
BfaI C|TAG 224, 237, 754, 1512, 1889, 2167, 2709, 2962, 5036, 5298, 5612
BglII A|GATCT 5294
BsaAI PyAC|GTPu 426, 2258, 3459, 3776, 4615, 4667
BsaBI GATNN|NNATC 2363, 5352
BsaHI GPu|CGPyC 4520
BsaJI C|CNNGG 1284, 2405, 2412, 4045, 4051, 5342, 5601
BsaWI [AT]|CCGG[AT] 2573
BsiEI CGPuPy|CG 2575
BsiHKAI G[AT]GC[AT]|C 1387
BslI CCNNNNN|NNGG 2308, 4231, 4459, 4616, 5642
BsoBI C|PyCGPuG 6121
Bsp1286I G[GAT]GC[CAT]|C 631, 1387, 3333
BspDI AT|CGAT 3388, 6004
BspHI T|CATGA 1329
BspT107I(HgiCI) G|G[TC][AG]CC 1894
BsrDI GCAATGNN| 1030
BsrFI Pu|CCGGPy 2573
BsrGI T|GTACA 5224
BsrI ACTGGN| 998, 3207, 4194
BssKI |CCNGG 4262, 4453, 5600
BstBI TT|CGAA 1559, 1757
BstF5I GGATGNN| 2017, 2662, 3710, 5135, 5801, 5818
BstNI CC|[AT]GG 4453, 5600
BstXI CCANNNNN|NTGG 2657
BstYI Pu|GATCPy 112, 675, 2884, 4058, 5294
BstZ17I GTA|TAC 873, 2419
BtgI C|CPuPyGG 1284, 2405, 4045
BtrI CAC|GTC 2617
BtsI GCAGTGNN| 5466
Cac8I GCN|NGC 78, 1315, 2695, 3065
Cfr10I [AG]|CCGG[TC] 2573
ClaI AT|CGAT 3388, 6004
DdeI C|TNAG 1398, 2498, 2504, 3069, 3266, 3533, 4034, 4343, 5094, 5290, 5647
DpnI GA-CH3|TC 111, 509, 674, 937, 1947, 2883, 2906, 4057, 4077, 4418, 4689, 4770, 5271, 5293, 5352, 5399, 5585, 5779, 5821, 6150
DpnII |GATC 111, 509, 674, 937, 1947, 2883, 2906, 4057, 4077, 4418, 4689, 4770, 5271, 5293, 5352, 5399, 5585, 5779, 5821, 6150
DraI TTT|AAA 597, 1460, 3158
DrdI GACNNNN|NNGTC 4226
EaeI Py|GGCCPu 561, 4048, 4550, 5137
EcoO109I PuG|GNCCPy 3178, 3223
EcoRI G|AATTC 1556, 2923, 4010
Fnu4HI GC|NGC 4089, 4279, 4432, 4576, 5062, 5851
HaeII PuGCGC|Py 4565
HaeIII GG|CC 560, 2400, 2429, 4047, 4450, 4471, 4549, 5136
HhaI GCG|C 4564
HinP1I G|CGC 4564
HincII GTPy|PuAC 833, 1038
HindIII A|AGCTT 7, 3854, 3954
HinfI G|ANTC 195, 985, 1394, 1730, 2325, 2358, 2502, 2769, 3192, 3724, 4018, 4038, 4068, 4111, 4197, 5181, 5948
HpaI GTT|AAC 833
HpaII C|CGG 2572, 4262, 4304
Hpy188I TCN|GA 465, 902, 1278, 1368, 1397, 2355, 2505, 2552, 2600, 2919, 3534, 3975, 4006, 4071, 4298, 4523, 4687, 4707, 4817, 4926, 5184, 5489, 5635, 5667
Hpy99I CG[AT]CG| 1133, 3543, 4024, 4073, 4227, 4370, 4391, 4991
HpyCH4III ACN|GT 37, 471, 1198, 1246, 1517, 2105, 2147, 2377, 2790, 3020, 3132, 3432, 4543, 4898, 5141, 5306, 5501, 5697, 5902, 6073
HpyCH4IV A|CGT 425, 869, 875, 1134, 1266, 2257, 2616, 3124, 3458, 3544, 3691, 3775, 4256, 4519, 4614, 4666, 4824, 4904, 5859
HpyCH4V TG|CA 958, 1025, 1119, 1205, 1604, 1652, 1684, 1968, 2031, 2088, 2119, 2692, 3062, 3196, 3308, 3503, 4173, 4577, 4919, 5063, 5852
MboI |GATC 111, 509, 674, 937, 1947, 2883, 2906, 4057, 4077, 4418, 4689, 4770, 5271, 5293, 5352, 5399, 5585, 5779, 5821, 6150
MscI TGG|CCA 561, 5137
MseI T|TAA 140, 358, 596, 608, 649, 822, 832, 915, 920, 924, 1073, 1082, 1143, 1170, 1359, 1459, 1802, 1882, 2130, 2396, 2702, 2878, 2913, 3052, 3098, 3121, 3157, 3217, 3283, 3347, 3478, 3490, 3521, 3528, 3562, 3568, 3941, 4465, 4858, 5098, 5204, 5383, 5784, 5979, 6106
MslI CAPyNN|NNPuTG 557, 2109, 3024, 5081
MspI C|CGG 2572, 4262, 4304
MwoI GCNNNNN|NNGC 4409, 4573, 5652
N.BstNBI GAGTCNNNN|N 1735, 5186
NciI CC|[CG]GG 4262
NcoI C|CATGG 1284, 2405
NdeI CA|TATG 3608, 6049
NlaIII CATG| 0, 668, 1023, 1154, 1283, 1328, 1844, 1966, 2029, 2090, 2109, 2404, 2638, 2694, 2909, 2951, 3064, 3412, 3505, 3998, 4200, 5396, 5517
NlaIV GGN|NCC 675, 1721, 1894, 4030, 5604
NsiI ATGCA|T 1969, 3063
NspI PuCATG|Py 669, 1845, 2030, 2091, 2639, 2695, 3065, 3413, 3506, 3999
PacI TTAAT|TAA 924
PaeR7I C|TCGAG 6121
PciI A|CATGT 669, 1845, 2639, 3413
PmlI CAC|GTG 4615
PpuMI PuG|G[AT]CCPy 3178, 3223
PsiI TTA|TAA 1215, 2070, 3004, 5540
PspGI |CC[AT]GG 4453, 5600
PstI CTGCA|G 5853
RsaI GT|AC 2579, 3139, 3460, 4207, 5090, 5223, 5337, 5676, 5691, 6037
SacI GAGCT|C 1387
Sau3AI |GATC 111, 509, 674, 937, 1947, 2883, 2906, 4057, 4077, 4418, 4689, 4770, 5271, 5293, 5352, 5399, 5585, 5779, 5821, 6150
Sau96I G|GNCC 1720, 2401, 2408, 2430, 2446, 3177, 3222, 3270, 4450, 4471, 5604
ScaI AGT|ACT 3140
ScrFI CC|NGG 4262, 4453, 5600
SfcI C|TPuPyAG 3227, 5500, 5853
SmlI C|TPyPuAG 1390, 1551, 2903, 5459, 5875, 6121
SnaBI TAC|GTA 426, 3776, 4667
SpeI A|CTAGT 238, 5613
SphI GCATG|C 2695, 3065
SspI AAT|ATT 606, 613, 1879, 3500
StyI C|C[AT][AT]GG 1284, 2405, 2412, 4051, 5342
Taqƒ¿I T|CGA 863, 963, 1131, 1558, 1756, 3387, 3541, 4989, 5591, 5701, 6003, 6120
TfiI G|A[AT]TC 195, 985, 1394, 2358, 2769, 3192, 3724, 4018, 4038, 4068, 4111
TliI C|TCGAG 6121
TseI G|C[AT]GC 4089, 4576, 5062, 5851
Tsp45I |GT[CG]AC 1264, 2113, 2380, 2858, 3696, 4217, 4499, 6044
Tsp509I |AATT 90, 156, 229, 332, 421, 429, 502, 565, 646, 738, 849, 907, 913, 922, 1053, 1084, 1126, 1141, 1145, 1168, 1379, 1435, 1448, 1478, 1555, 1597, 1645, 1668, 1822, 1852, 1862, 1884, 2058, 2184, 2229, 2555, 2807, 2815, 2922, 3036, 3102, 3319, 3475, 3538, 3560, 3566, 3572, 3647, 4009, 4866, 4930, 5113, 5419, 5558, 5581, 6023, 6130
TspRI NNCA[CG]TGNN| 2106, 2609, 4016, 5142, 5466, 5903
XbaI T|CTAGA 2168, 2963, 5299
XhoI C|TCGAG 6121
XmnI GAANN|NNTTC 2774, 4387


Click here to view TAIR data

>AT5G66940 genomic sequence (4001-4678,) length:6177
ccatgaaagc ttctttcttt gctctttttc tttatttact gtttctttct 
50
ccattgtttt tgaaagctct ttttttagct ggctctatac aaattacaac 
100
tacctaaaga aagatcctcc catttctttt ttcactttta tttaagtttg 
150
tgatgctaat tttcttgttt ttctcttctt tacacctaaa acagagattc 
200
ttggtgagaa tatatataca tacttctagt aattattact agtttgtgtg 
250
tgttgaatat attggtttag ctaatcttgt tttgacaaaa gaactttagc 
300
tgtttttact acataaagga taactaaact aaaaattagc cgttgagata 
350
ttatttcctt taatccaagt ggacttcttt tcttatatat tttcttttgt 
400
attttctctg taaatagctc taaattacgt aattcgtctg cttcaccaat 
450
ctttttctat atctgtctga aacggttttg agcaagtaaa taataaatat 
500
cccaatttat gatccaaccc acgcatttat tgattgaaca tatatattgg 
550
ctcataaaag tggccaaatt tatgaataaa tatatataag cctttattta 
600
aaataaatat taaatattag taggtgatgt gggctcaaca atagtgtaat 
650
ttaatatcca taactataac atgtggatcc tcacaaatac tttatataaa 
700
taaataaata aaaaagtaaa aaaatatcat attattgtaa attcttgttt 
750
ttaggctaga aatactaatc tcctaccgat aatcataatc ctctccttac 
800
taaacatttc tatatttcca ttattaagtt ttgttaacag cttacgcaca 
850
aattttattc atagtcgata acgtatacgt tacggatact tatatatgga 
900
aatctgaaaa tttgaattaa cttaattaat gtagaagaga tcaaggcaag 
950
ggacaatcgt gcattcgatt gttatagctt gtagagaatc cttgctgact 
1000
ggtatcaaat ccaaaatgct tactcatgca atgattagtc aactatctat 
1050
ctacaattac ttattcaccc ttgattaaat catttaattt tgactactca 
1100
cacttttcat aaagtggctt tgcaacaaat tctcgacgtt ccaattaatt 
1150
tcttacatga ttttttctaa attaaacaag tttgaaatct tcctatggac 
1200
tgtgtgtgca tagtttataa acacatacaa agagacaaac aaaagaacag 
1250
taacagatgg gaatgtgacg ttcacttctc cgaccatgga aaagaacaca 
1300
acggaagtgg agacgcacgc acccagtttc atgagtagag atgtgatata 
1350
ttttggcaca ttaatctttc agactatgaa aattttgagc tcaagaatct 
1400
gagtttgacg caagaataaa gggcaagttt tggaacaatt ttcgccacta 
1450
atttgatatt ttaaaggtct acaagataca atttattatc caaagtttcc 
1500
tacattattt tcactagaca gttactccac ttggtttgta tattcaacaa 
1550
ctcaagaatt cgaaagatat tttccaaaaa tatatcgctc ttcatcataa 
1600
ttttttgcaa caaaaataaa taaaataaaa ataaaataat aataataatt 
1650
tgttgcaaca agacaaaaaa attacggaga tgatttgcat ttgggcttcg 
1700
tctatacttc tcttgttatt ggtccccgta gagtcttcta tatttcctcc 
1750
aacaacttcg aaagtcataa ataaaactct tttgtggagt attattttat 
1800
ttgttaatgc gttttttttt tgtaattatt gtctcctctt attgacatgt 
1850
aataattgtt tcaaatttat ttattttgaa tatttaattt ctaggcacct 
1900
tttactatta tgatgatgac caagttttca ctttcaaaat gggacacaga 
1950
tcgtggtttt agatgaccat gcatcaataa agttattttc agctttgaat 
2000
atatttttca taatgggatg tttggtgaaa catgcacaaa cacaacataa 
2050
aagccatata attagggact tataataaag aacgattatt gcatgttttc 
2100
tttacactgt catgtcacat tgcatatcat tttaatcaaa tcacatcaca 
2150
gtatcaatac ctatatatct agaagaacta tatcaaatta tcaactatcg 
2200
tttgattagt tagcaagaaa gagagaggat aatttagccc aacaatgttg 
2250
ttttttccac gtaagtttgt agttgatttc atttgggtca taacaaaatc 
2300
cgcccatata tggtttcgtt tcatagactc ggcttggggt ttgtttagca 
2350
gggtgtcaga ttcacatcta aaatacaaca gtcacaaatc tcttatgtta 
2400
aggcccatgg tccaaggggt atacatatta ggcccattag aaatacggac 
2450
cagaaggtaa atgacgaaaa caccctttca aaaggaaaca gagaaggact 
2500
gagactcaga gaggaaaagg acaaaaagaa tgggataaag agagaaggtg 
2550
tgtcagaatt tgaccagatt agaccggtcg gtacacagag taaggacggc 
2600
tctgaaccag tgtagacacg tcttggcaca tacttctcac atgtctctct 
2650
ccaaaatgtt ggatgctttt tggtgtgaaa gggagtgaag atttgcatgc 
2700
ttcttaactc ctagcttctc cgtatccatt ctttacccga caaccttcgc 
2750
ttctgtctct tcacaaaacg aatctcttct gtctcttttg actgttttta 
2800
gcctccccaa ttttacaatt actaccctct cttctttcct gtggaacaaa 
2850
tcacatttgt cacactctct ctctctacct taaagatcca tttgtcttgt 
2900
tcctcaagat catgttaagt cagaattcac ccgactattg ttattctgtc 
2950
ttcatggtat tgtctagatt tttacttttt atagctccta aacaacataa 
3000
gatttataat ctattattac accgtaatga taaaacaaat tgaaaacatt 
3050
gtcttaatct tgatgcatgc tgagagataa gataagacca taacaaaact 
3100
taaaattgat aatcaagttg gtttaacgta aaactgttga gtacttttac 
3150
ttgatgtttt aaatgtagtt tttttgagga cctgaacgca ttgattctgc 
3200
atttatactg gtattctatt aaggacctgt agtgattggt agcacatcta 
3250
cacacaccat caatctctta ggtccatata ccatttaatc cttctttttt 
3300
tggaaaagat gcacacaaca aattaggcta atgagccctc ctaaacactt 
3350
aacaatataa tggctgtatt attgggaact gctttacatc gataagctca 
3400
atagtctcta ctacatgtag cctactctct tcacagttca gtcttcactt 
3450
cccgtagaca cgtacttttg acataaaatt taatgtattt cttaaaacaa 
3500
atattgcatg tagaaacctt ttttaacttt taactcagaa attcgacgtg 
3550
tataacacca taattaaaat taaaatttca aaagcattgt tagtcagcaa 
3600
atgtaatcat atgatttttc tttcacttat ttatcataag ttattttcaa 
3650
ttttggtttc ttccaacatt cactaatgtc tatgccatca aaacgtgtga 
3700
cagattatgg atggagagat tagagaatcg tggttttatt tcaaaacaga 
3750
aaatcttgaa agaagagcca ccagctacgt ataatgaagt aaagaaacag 
3800
agcatatcta ttctctctct atgttcacaa taaacccaac atactctgtc 
3850
aaaaagcttc actttcttct ccttccccat ctctctctct ctccctctcc 
3900
tccataaaag gaaactctta ctctatcaca aagttccaac ctttaactct 
3950
ccaaagcttc aaaaactctc aactttcaga taacctctct tctcaacaac 
4000
ATGCCTTCTG AATTCAGTGA ATCTCGTCGG GTTCCTAAGA TTCCCCACGG 
4050
CCAAGGAGGA TCTGTTGCGA TTCCGACGGA TCAACAAGAG CAGCTTTCTT 
4100
GTCCTCGCTG TGAATCAACC AACACCAAGT TCTGTTACTA CAACAACTAC 
4150
AACTTCTCAC AACCTCGTCA TTTCTGCAAG TCTTGTCGCC GTTACTGGAC 
4200
TCATGGAGGT ACTCTCCGTG ACATTCCCGT CGGTGGTGTT TCCCGTAAAA 
4250
GCTCAAAACG TTCCCGGACT TATTCCTCTG CCGCTACCAC CTCCGTTGTC 
4300
GGAAGCCGGA ACTTTCCCTT ACAAGCTACG CCTGTTCTTT TCCCTCAGTC 
4350
GTCTTCCAAC GGCGGTATCA CGACGGCGAA GGGAAGTGCT TCGTCGTTCT 
4400
ATGGCGGTTT CAGCTCTTTG ATCAACTACA ACGCCGCCGT GAGCAGAAAT 
4450
GGGCCTGGTG GCGGGTTTAA TGGGCCAGAT GCTTTTGGTC TTGGGCTTGG 
4500
TCACGGGTCG TATTATGAGG ACGTCAGATA TGGGCAAGGA ATAACGGTCT 
4550
GGCCGTTTTC AAGTGGCGCT ACTGATGCTG CAACTACTAC AAGCCACATT 
4600
GCTCAAATAC CCGCCACGTG GCAGTTTGAA GGTCAAGAGA GCAAAGTCGG 
4650
GTTCGTGTCT GGAGACTACG TAGCGTGAta gagactatcg gatcagcttc 
4700
tacttcatcg gagggtttca atctatcttc ttcttctttt agcttctcta 
4750
ccctaacttt cagttttagt tgatctggtt cttatttagt taggttactt 
4800
gtgaacgaaa cttcaaatca gagaaacgtt tgtttgtttg tttgtttttt 
4850
tggctctatt taatgtcaat tccaacttta gaaatcttgg aaaacagaac 
4900
agtccacgtt gtttaggaaa tgcaagtctg aaatttatat acaacacatc 
4950
acttatatac aacaaagcat agataaggta acattatcca tcgacgagga 
5000
gagggtaaca tataatatat ttacacagaa aatgtaacta ggaaagtgtt 
5050
gattggagtt aggctgcacc aagaaacatc aaagtgtata tgtactaagt 
5100
taagtggaaa atggaattta gccgagcatt gatggatggc cactgtgtag 
5150
tatcctcttg aacatatcca tcccaaaggc agagtccgat gagctgaaac 
5200
aaaacttaac tcatttcaac acttgtacaa caaagatata aagaacattc 
5250
ttcactcatc tatgtctgtg gggatcgcta cacctaaaga ctaagatctc 
5300
tagaacacag tttgatatgt gaataaatga agactgatgt accttgggat 
5350
agtgatctca aaagggtagt agattacacc atcgttaatg ggaggaacat 
5400
gatccttctt ctcattcacg aattttatga tttggaacaa gacttcttga 
5450
agggattgct caagcagtgt cctacgagaa cttctctcct ccgatgcctc 
5500
tacagttatt gattagagca tgacaatcac ttcacactcT TATAATAATA 
5550
AAAAGATGTA ATTTTTGGAG ATGAGAACAG GAAATTGATC AATCGAACCT 
5600
CCAGGGTCCA TAACTAGTTT AGAATGGTGA GACTTTCCGA CAGGGGGCTT 
5650
AGTGGGCTGA AGCACATTCA GATTGATGTA CCATTGTTCC CAGTACAACC 
5700
GTTCGATTTT GGTGAACCAA GAAGGCTGTT TGCTTTTGAC TTCATAGAAC 
5750
GATAGACAAA Tcttggcaaa aagaaaaaga gatcattaac agccacaaag 
5800
gatgagacaa tgaaaaggat gagatcatta cttcattata caaccctata 
5850
tgctgcagaa acgttcaatc cttgcttgag caaggtatgg aatatgtggt 
5900
tcactgtcaa tgaaatggaa atcaagcatt tgttatctgt atatacCTGA 
5950
CTCTTTTTGT TTGGGTGTTT CTCAATCCAG TTAATGAACT GCTCAATCTT 
6000
TTCATCGATT TTCTTCTCCA CTTCAATTTC ACCGCATTGT ACctgtgaca 
6050
tatgggggaa aaaggaaatc ccaacagtat caaaataaaa gcatactcac 
6100
catttggtta aacttgtaac ctcgagaaag aaattgaaat cttacATAAG 
6150
TGATCTCAAA AAGCTCCAAA TCAATAT
6200