fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G02340 (FBI1, RSF1, REP1, HFR1, bHLH026)

Alias FBI1, RSF1, REP1, HFR1, bHLH026
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / LONG HYPOCOTYL IN FAR-RED1
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description REDUCED SENSITIVITY TO FAR-RED LIGHT 1, REDUCED PHYTOCHROME SIGNALING 1, LONG HYPOCOTYL IN FAR-RED, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
TAIR annotation Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. (.1)
Gene model
Gene model cDNA support
AT1G02340.1 26
Entry clone (w/o stop) RE_0192
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(P) 209: protein metabolism ->protein polyubiquitination
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 3712: other molecular functions ->transcription cofactor activity
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5829: cytosol ->cytosol
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7165: signal transduction ->signal transduction
(P) 9585: response to abiotic or biotic stimulus ->red, far-red light phototransduction
(P) 9642: response to abiotic or biotic stimulus ->response to light intensity
(P) 9738: signal transduction ->abscisic acid-activated signaling pathway
(P) 9785: signal transduction ->blue light signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 
IEYMKNLQLQLQMMST at 181/292 in AT1G02340.1
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project stem fusion
fused stem (direct input), dwarf (A21701, A21782), dark green leaf (A21782), sterile or low fertility (A21782)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment