fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G09770 (ATCDC5, AtMYBCDC5)

Alias ATCDC5, AtMYBCDC5
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / ATR1
AtTFDB
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1)
TAIR annotation Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1. (.1)
Gene model
Gene model cDNA support
AT1G09770.1 102
Entry clone (w/o stop) RE_1329_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10204: response to stress ->defense response signaling pathway, resistance gene-independent
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to stress ->defense response to bacterium
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 45087: response to stress ->innate immune response
(P) 50832: response to stress ->defense response to fungus
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5681: nucleus ->spliceosomal complex
(P) 6281: response to stress ->DNA repair
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 6397: other cellular processes ->mRNA processing
(P) 7049: other cellular processes ->cell cycle
(P) 8380: other metabolic processes ->RNA splicing
(C) 9507: chloroplast ->chloroplast
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
(P) 9870: response to stress ->defense response signaling pathway, resistance gene-dependent
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR830: 3'-TTGGATTTGATAAACCTCTTCT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 3
rice 1 1
sorghum 1 1 2
physcomitrella 1 1
Total 5 4 9
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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