fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G13400 (JGL, NUB)

Alias JGL, NUB
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDB
DATFC2H2
TAIR short description NUBBIN, JAGGED-LIKE, C2H2 and C2HC zinc fingers superfamily protein (.1)
TAIR annotation Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background. (.1)
Gene model
Gene model cDNA support
AT1G13400.1 1
Entry clone (w/o stop) IE_0100
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10094: developmental processes ->specification of carpel identity
(P) 10097: developmental processes ->specification of stamen identity
(P) 30154: other cellular processes ->cell differentiation
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 46872: other binding ->metal ion binding
(P) 48440: developmental processes ->carpel development
(P) 48443: developmental processes ->stamen development
(P) 48653: developmental processes ->anther development
(C) 5634: nucleus ->nucleus
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif
DENNTLDLNNLPDDPSR at 8/207 in AT1G13400.1
Repression motif
in putative orthologs
        
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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