fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G19220 (IAA22, ARF11, ARF19)

Alias IAA22, ARF11, ARF19
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
TAIR annotation Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. (.1)
Gene model
Gene model cDNA support
AT1G19220.1 20
Entry clone (w/o stop) IE_05F03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10311: developmental processes ->lateral root formation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 48366: developmental processes ->leaf development
(P) 48527: developmental processes ->lateral root development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 8 16
soybean 1 9 16 26
rice 1 2 7 10
sorghum 1 3 4 8
physcomitrella 1 7 8
Total 4 22 42 68
Repression motif 
PSPSQQLQLQLLQKLQ at 644/1086 in AT1G19220.1
Repression motif
in putative orthologs		 
QLSQSELQLQLLQKIQ at 550/952 in sorghum Sb003149 (Type Ia)
QLSDQELQLQLLQKLQ at 646/1270 in sorghum Sb026752 (Type II)
QLSDQQLQLQLLQKLQ at 641/1191 in sorghum Sb034305 (Type II)
NPSEQQLHLQLLQKLQ at 641/1087 in soybean Gm035640 (Type II)
DNSEQQLHLQLLQNLQ at 634/1047 in poplar Pt008477 (Type II)
QLTDQQLQLQLLQKLQ at 656/991 in rice Os026273 (Type Ia)
NPSEQQLHLQLLQKLQ at 647/1091 in soybean Gm046014 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment