fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G31320 (LBD4)

Alias LBD4
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description LOB domain-containing protein 4 (.1)
TAIR annotation LOB domain-containing protein 4 (LBD4); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 9 (TAIR:AT1G16530.1); Has 1039 Blast hits to 1034 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1039; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G31320.1 11
Entry clone (w/o stop) RE_1041_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 22 25
soybean 1 5 33 39
rice 1 11 12
sorghum 1 1 10 12
physcomitrella 1 1 9 11
Total 4 10 85 99
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
APSIPALHLRLPTALC at 247/337 in sorghum Sb032110 (Type III)
GAPPPRLRLRLLHLRP at 198/418 in sorghum Sb020619 (Type III)
NHIPHRLGLGLGGVLN at 55/260 in sorghum Sb008940 (Type III)
HAETAALQLQLQQQHQ at 111/156 in rice Os039759 (Type III)
HAETAALQLQLQQQHQ at 111/156 in rice Os037274 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50066
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, not obtained 
            
            
          

         

         

          Comment