fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G46264 (SCZ, AT-HSFB4)

Alias SCZ, AT-HSFB4
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description SCHIZORIZA, heat shock transcription factor B4 (.1)
TAIR annotation Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions. (.1)
Gene model
Gene model cDNA support
AT1G46264.1 14
Entry clone (w/o stop) IE_04D09(09A12)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 8356: other cellular processes ->asymmetric cell division
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 5 6
rice 1 4 5
sorghum 1 1 2
physcomitrella 1 1
Total 4 1 14 19
Repression motif 
NMRKTKLFGVSLPSS at 305/348 in AT1G46264.1
VLDQSDLALNLMTAST at 336/348 in AT1G46264.1
Repression motif
in putative orthologs		 
PQAAPKLFGVSLNGS at 335/455 in physcomitrella Pp004663 (Type Ib)
KCMKVELGLELRISAT at 436/455 in physcomitrella Pp004663 (Type Ib)
STSPVKLFGVPLSGN at 252/270 in poplar Pt028025 (Type II)
NSCKTKLFGVSLQSK at 320/370 in soybean Gm039389 (Type II)
NGCKTKLFGVSLQTK at 317/364 in poplar Pt038326 (Type Ia)
VLDKDDLGLNLMPLSR at 353/364 in poplar Pt038326 (Type Ia)
GGDTVKLFGVSLHGR at 272/300 in rice Os029276 (Type II)
NSCKTKLFGVSLQSK at 319/363 in soybean Gm008845 (Type II)
VLEKDDLGLNLMPPST at 352/363 in soybean Gm008845 (Type II)
NSCKTKLFGVSLQSK at 319/363 in soybean Gm014034 (Type Ia)
VLEKDDLGLNLMPPST at 352/363 in soybean Gm014034 (Type Ia)
SSSPVKLFGVPLIDN at 254/272 in poplar Pt021856 (Type II)
NGCKTKLFGVPLHSK at 321/368 in poplar Pt016911 (Type II)
VLDKDDLGLNLMPPSR at 357/368 in poplar Pt016911 (Type II)
GGGSTKLFGVHLSSA at 327/380 in rice Os031787 (Type II)
GGDTVKLFGVSLHGR at 282/310 in rice Os029275 (Type II)
NGCKTKLFGVPLHSK at 302/349 in poplar Pt016912 (Type II)
VLDKDDLGLNLMPPSR at 338/349 in poplar Pt016912 (Type II)
DDGTVKLFGVALQGK at 282/312 in sorghum Sb006826 (Type II)
NNSSVKLFGVPLCGK at 252/291 in soybean Gm005355 (Type II)
DDAAVRLFGVRLDDD at 274/305 in rice Os013163 (Type II)
SSAPTKLFGVHLSAA at 328/394 in rice Os033943 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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