fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G52150 (ATHB15, ICU4, CNA, ATHB-15)

Alias ATHB15, ICU4, CNA, ATHB-15
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / REVOLUTA/INTERFASCICULAR FIBERLESS1
AtTFDBHomeobox / HD-Zip III
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3)
TAIR annotation Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. (.1), Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. (.2), Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. (.3)
Gene model
Gene model cDNA support
AT1G52150.1 36
AT1G52150.2 32
AT1G52150.3 22
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10014: other biological processes ->meristem initiation
(P) 10073: other biological processes ->meristem maintenance
(P) 10075: other biological processes ->regulation of meristem growth
(P) 10087: other biological processes ->phloem or xylem histogenesis
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48263: developmental processes ->determination of dorsal identity
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 80060: developmental processes ->integument development
(F) 8289: other binding ->lipid binding
(P) 9855: developmental processes ->determination of bilateral symmetry
(P) 9887: developmental processes ->animal organ morphogenesis
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR165a: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR165b: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR166a: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166b: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166c: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166d: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166e: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166f: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166g: 3'-CCCCTTACTTCGGACCAGGCT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 7 9
soybean 1 4 11 16
rice 1 4 5
sorghum 2 3 5
physcomitrella 1 4 5
Total 2 9 29 40
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
VLSSYRLHLALDLTRP at 746/880 in physcomitrella Pp026644 (Type III)
AVNSDELNLALAHYAT at 102/1010 in physcomitrella Pp014242 (Type III)
VLRSYRLHLGLDLTRS at 876/1010 in physcomitrella Pp014242 (Type III)
GAHARQLDLHLTLRVS at 851/940 in sorghum Sb031905 (Type III)
QSYHYHLGLELLNQSD at 709/980 in sorghum Sb022478 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        dwarf phenotype (16/49), abnormal rosette formation

         too many rosettes (direct input), 
         bushy (direct input), 
         dwarf (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         abnormal leaf 
         (A20266-158)
         

         
         

         hyponastic leaf 
         (A20592-119)
         

         anther indehiscent, 
         sterile or low fertility 
         (A20263-30)
         

         
         

         abnormal leaf 
         (A20266-185)
         

         
         


        		
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50068
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 1 of 4 lines 
           dwarf 
[Publication link]		
           
          

         

         

          Comment