Alias
FRS6
TF Classification
FioreDB FAR1_related (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDB FAR1 (v3.0)
DATF
TAIR short description
FAR1-related sequence 6 (.1)
TAIR annotation
FAR1-related sequence 6 (FRS6); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 8 (TAIR:AT1G80010.1); Has 1626 Blast hits to 1478 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 91; Plants - 1518; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). (.1)
Gene model
Entry clone (w/o stop)
External link
Gene Ontology (GO)
(P) 10018: signal transduction
->far-red light signaling pathway
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(P) 42753: other biological processes
->positive regulation of circadian rhythm
(P) 45893: other metabolic processes
->positive regulation of transcription, DNA-templated
(C) 5634: nucleus
->nucleus
(F) 8270: other binding
->zinc ion binding
(P) 9585: other cellular processes
->red, far-red light phototransduction
(P) 9639: response to abiotic or biotic stimulus
->response to red or far red light
miRNA/tasiRNA
Orthologs
Repression motif
Repression motif in putative orthologs
LSDKYRLALRL VRETE at 719/1885 in sorghum Sb027511 (Type Ib)
LSDKYRLALRL VRETE at 1394/1885 in sorghum Sb027511 (Type Ib)
TGCLAMLRLRL VESNR at 183/732 in poplar Pt011396 (Type III)
LSDKYRLALRL VREME at 640/818 in rice Os008702 (Type Ib)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment