fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G66810 (AtC3H14)

Alias AtC3H14
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTFC3H-type 1(Zn) / putative zinc finger protein
AtTFDB
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
TAIR annotation Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G68200.1); Has 998 Blast hits to 914 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 425; Fungi - 99; Plants - 223; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G66810.1 1
Entry clone (w/o stop) RE_03B02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1901347: other cellular processes ->negative regulation of secondary cell wall biogenesis
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3729: DNA or RNA binding ->mRNA binding
(F) 3730: DNA or RNA binding ->mRNA 3-UTR binding
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(F) 46872: other binding ->metal ion binding
(P) 51511: other cellular processes ->negative regulation of unidimensional cell growth
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5829: cytosol ->cytosol
(P) 61158: other cellular processes ->3-UTR-mediated mRNA destabilization
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 1 3 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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