| Alias |
|
| TF Classification |
|
| TAIR short description |
B-box zinc finger family protein (.1) |
| TAIR annotation |
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 9 (TAIR:AT3G07650.4); Has 1632 Blast hits to 1343 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 1580; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
RE_1085_x |
| External link |
|
| Gene Ontology (GO) |
| (C) 16021: other membranes |
->integral component of membrane |
| (F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
| (C) 5622: other intracellular components |
->intracellular |
| (C) 5634: nucleus |
->nucleus |
| (P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
| (F) 8270: other binding |
->zinc ion binding |
|
| miRNA/tasiRNA |
| Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
| miR838: 3'-ACACGTTCTTCATCTTCTTTT-5' |
|
 |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
1 |
|
|
1 |
| soybean |
|
1 |
|
|
1 |
| rice |
|
|
|
|
|
| sorghum |
|
|
|
|
|
| physcomitrella |
|
|
|
|
|
| Total |
|
2 |
|
|
2 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> done |
| Plasmid construction | -> done |
| Transformed | -> done |
| T1 seed harvested | -> done |
| T2 seed harvested | -> not_yet |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
| Comment |
|
