fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT1G72570
Alias
TF Classification
FioreDB
AP2_ERF
(Click to show phylogenetic tree)
RARTF
AP2/EREBP
/ AINTEGUMENTA
AtTFDB
AP2-EREBP
PlnTFDB
AP2-EREBP
(v3.0), AP2-EREBP (v1.0)
DATF
AP2-EREBP
TAIR short description
Integrase-type DNA-binding superfamily protein (.1)
TAIR annotation
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AINTEGUMENTA-like 5 (TAIR:AT5G57390.1); Has 7692 Blast hits to 5276 proteins in 259 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 7602; Viruses - 4; Other Eukaryotes - 74 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT1G72570.1
0
Entry clone (w/o stop)
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: other cellular processes
->regulation of transcription, DNA-templated
(P) 7275: developmental processes
->multicellular organism development
(P) 9873: signal transduction
->ethylene-activated signaling pathway
(P) 9887: developmental processes
->animal organ morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
10
12
soybean
1
12
13
rice
1
4
5
sorghum
2
1
3
physcomitrella
1
1
Total
2
5
27
34
Repression motif
NTNGS
MLSLAL
SHGAC at 162/415 in AT1G72570.1
Repression motif
in putative orthologs
PRLPR
RLRLSL
SSPCR at 123/611 in sorghum
Sb022187
(Type II)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment