Alias |
|
TF Classification |
FioreDB | C3HZnF (Click to show phylogenetic tree) |
RARTF | |
AtTFDB | |
PlnTFDB | C3H (v3.0), C3H (v1.0) |
DATF | C3H |
|
TAIR short description |
Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) |
TAIR annotation |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 7050 Blast hits to 2615 proteins in 330 species: Archae - 4; Bacteria - 260; Metazoa - 1495; Fungi - 1019; Plants - 181; Viruses - 41; Other Eukaryotes - 4050 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
|
External link |
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Gene Ontology (GO) |
(P) 15031: transport |
->protein transport |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 46872: other binding |
->metal ion binding |
(P) 51028: DNA or RNA metabolism |
->mRNA transport |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(C) 5635: nucleus |
->nuclear envelope |
(C) 5643: other intracellular components |
->nuclear pore |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
1 |
|
|
1 |
soybean |
|
1 |
|
|
1 |
rice |
|
1 |
|
|
1 |
sorghum |
|
1 |
|
|
1 |
physcomitrella |
|
|
|
|
|
Total |
|
4 |
|
|
4 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> not_yet |
Plasmid construction | -> not_yet |
Transformed | -> not_yet |
T1 seed harvested | -> not_yet |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
|
|
Comment |
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