fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G76320 (FRS4)

Alias FRS4
TF Classification
FioreDBFAR1_related (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBFAR1 (v3.0)
DATF
TAIR short description FAR1-related sequence 4 (.1.2)
TAIR annotation FAR1-related sequence 4 (FRS4); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1); Has 1570 Blast hits to 1410 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 91; Plants - 1475; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G76320.1 16
AT1G76320.2 14
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10018: other cellular processes ->far-red light signaling pathway
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42753: other biological processes ->positive regulation of circadian rhythm
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9585: other cellular processes ->red, far-red light phototransduction
(P) 9639: response to abiotic or biotic stimulus ->response to red or far red light
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 5 6
soybean 1 1 2 4
rice
sorghum
physcomitrella
Total 1 2 7 10
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
MIDDMIDLQDNVPADDVV at 14/840 in poplar Pt005406 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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