Alias |
HSFA5-like |
TF Classification |
FioreDB | HSF (Click to show phylogenetic tree) |
RARTF | HSF |
AtTFDB | |
PlnTFDB | HSF (v3.0), HSF (v1.0) |
DATF | HSF |
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TAIR short description |
Winged helix-turn-helix transcription repressor DNA-binding (.1) |
TAIR annotation |
Winged helix-turn-helix transcription repressor DNA-binding; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G13980.1); Has 1245 Blast hits to 1235 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 110; Plants - 743; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
IE_01H06_x |
External link |
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Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 43565: DNA or RNA binding |
->sequence-specific DNA binding |
(C) 5634: nucleus |
->nucleus |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
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miRNA/tasiRNA |
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Orthologs |
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Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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soybean |
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rice |
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sorghum |
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physcomitrella |
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Total |
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0E0 |
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Repression motif |
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Repression motif in putative orthologs |
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Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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