fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G77920

Alias
TF Classification
FioreDBbZIP (Click to show phylogenetic tree)
RARTFTGA3
AtTFDBbZIP
PlnTFDBbZIP (v3.0), bZIP (v1.0)
DATFbZIP
TAIR short description bZIP transcription factor family protein (.1)
TAIR annotation bZIP transcription factor family protein; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGA1A-related gene 3 (TAIR:AT1G22070.1); Has 1009 Blast hits to 1009 proteins in 97 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 28; Plants - 845; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G77920.1 28
Entry clone (w/o stop) IE_04A05
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to stress ->defense response to bacterium
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(F) 5516: protein binding ->calmodulin binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR8170: 3'-TGTATCTTTTAGAAATTCGTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 9 11
soybean 4 23 27
rice 1 5 6
sorghum 1 5 6
physcomitrella 1 6 7
Total 2 7 48 57
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040104 (Type II)
RIKLNQLELELQRARQ at 81/342 in physcomitrella Pp002328 (Type III)
SQGLEALQLSLSDTLS at 249/342 in physcomitrella Pp002328 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002327 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002327 (Type III)
QTTDQDLELKLLVEAG at 209/397 in rice Os019143 (Type II)
QQAEDALSLGLDKLQQ at 156/259 in soybean Gm034855 (Type III)
QQAEDALSLGLEKLQQ at 230/326 in soybean Gm014775 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002326 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002326 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040102 (Type II)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002325 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002325 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040103 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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