fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G79580 (ANAC033, SMB, NST6)

Alias ANAC033, SMB, NST6
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
TAIR annotation NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions. (.1), NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions. (.2), NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions. (.3)
Gene model
Gene model cDNA support
AT1G79580.2 3
AT1G79580.1 3
AT1G79580.3 3
Entry clone (w/o stop) IE_07H07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10455: other cellular processes ->positive regulation of cell fate commitment
(P) 3002: developmental processes ->regionalization
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48829: developmental processes ->root cap development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9834: other cellular processes ->plant-type secondary cell wall biogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 8
soybean 1 5 6
rice 1 5 6
sorghum 1 4 5
physcomitrella
Total 4 21 25
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
DVIREIDLNKLEPWDLKE at 85/509 in sorghum Sb033864 (Type II)
DVIREIDLNKLEPWDLKD at 45/359 in rice Os007249 (Type II)
DVIREIDLNKLEPWDLKD at 45/202 in rice Os025152 (Type III)
DVIREIDLNKLEPWDLKD at 45/359 in rice Os007248 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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