fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G80010 (FRS8)

Alias FRS8
TF Classification
FioreDBFAR1_related (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBFAR1 (v3.0)
DATF
TAIR short description FAR1-related sequence 8 (.1)
TAIR annotation FAR1-related sequence 8 (FRS8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 6 (TAIR:AT1G52520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G80010.1 14
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10018: response to abiotic or biotic stimulus ->far-red light signaling pathway
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42753: other biological processes ->positive regulation of circadian rhythm
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(F) 8270: other binding ->zinc ion binding
(P) 9585: response to abiotic or biotic stimulus ->red, far-red light phototransduction
(P) 9639: response to abiotic or biotic stimulus ->response to red or far red light
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 2 3
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 5 9
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
TGCLAMLRLRLVESNR at 183/732 in poplar Pt011396 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment