Alias |
|
TF Classification |
FioreDB | C3HZnF (Click to show phylogenetic tree) |
RARTF | |
AtTFDB | |
PlnTFDB | C3H (v3.0), C3H (v1.0) |
DATF | C3H |
|
TAIR short description |
Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) |
TAIR annotation |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6263 Blast hits to 4194 proteins in 354 species: Archae - 14; Bacteria - 176; Metazoa - 2274; Fungi - 740; Plants - 301; Viruses - 209; Other Eukaryotes - 2549 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
|
External link |
|
Gene Ontology (GO) |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 46872: other binding |
->metal ion binding |
(C) 5737: other cytoplasmic components |
->cytoplasm |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miR838: 3'-ACACGTTCTTCATCTTCTTTT-5' |
|
|
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
3 |
|
4 |
soybean |
1 |
|
3 |
|
4 |
rice |
1 |
|
|
|
1 |
sorghum |
1 |
|
|
|
1 |
physcomitrella |
1 |
|
1 |
|
2 |
Total |
5 |
|
7 |
|
12 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> not_yet |
Plasmid construction | -> not_yet |
Transformed | -> not_yet |
T1 seed harvested | -> not_yet |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|