fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G22840 (ATGRF1)

Alias ATGRF1
TF Classification
FioreDBGRF (Click to show phylogenetic tree)
RARTF
AtTFDBGRF
PlnTFDBGRF (v3.0), GRF (v1.0)
DATFGRF
TAIR short description growth-regulating factor 1 (.1)
TAIR annotation Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower (.1)
Gene model
Gene model cDNA support
AT2G22840.1 37
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 16021: other membranes ->integral component of membrane
(P) 19760: other metabolic processes ->glucosinolate metabolic process
(F) 19904: protein binding ->protein domain specific binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48364: developmental processes ->root development
(P) 48366: developmental processes ->leaf development
(F) 5515: protein binding ->protein binding
(F) 5524: nucleotide binding ->ATP binding
(C) 5634: nucleus ->nucleus
(P) 61062: developmental processes ->regulation of nematode larval development
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9624: response to abiotic or biotic stimulus ->response to nematode
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR396a: 3'-GTCAAGTTCTTTCGACACCTT-5'
5'--3'

miR834: 3'-AATGGTGGCGATGACGATGGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella
Total 4 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(06Feb)

          
Plasmid construction -> The work interrupted(06Feb)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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