fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT2G25900 (ATTZF1, ATCTH)
Alias
ATTZF1, ATCTH
TF Classification
FioreDB
C3HZnF
(Click to show phylogenetic tree)
RARTF
C3H-type 1(Zn)
/ putative zinc finger protein
AtTFDB
PlnTFDB
C3H
(v3.0), C3H (v1.0)
DATF
C3H
TAIR short description
A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
TAIR annotation
putative Cys3His zinc finger protein (ATCTH) mRNA, complete (.1.2)
Gene model
Gene model
cDNA support
AT2G25900.1
281
AT2G25900.2
281
Entry clone (w/o stop)
RE_01F09
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 3723: DNA or RNA binding
->RNA binding
(F) 3727: DNA or RNA binding
->single-stranded RNA binding
(F) 46872: other binding
->metal ion binding
(C) 5634: nucleus
->nucleus
(C) 5737: other cytoplasmic components
->cytoplasm
(P) 61157: other metabolic processes
->mRNA destabilization
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence
miRNA/tasiRNA sequence
Map
5'--3'
miR5640: 3'-CTTAGATTAAGGAAGAGAGTA-5'
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
2
soybean
3
3
6
rice
1
2
3
sorghum
1
1
physcomitrella
Total
6
6
12
Repression motif
Repression motif
in putative orthologs
IMTVD
RLNLGL
IGDEE at 378/687 in sorghum
Sb032325
(Type II)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment