fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G26150 (ATHSFA2)

Alias ATHSFA2
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description heat shock transcription factor A2 (.1.2)
TAIR annotation member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. (.1), member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. (.2)
Gene model
Gene model cDNA support
AT2G26150.1 8
AT2G26150.2 4
Entry clone (w/o stop) IE_04B01
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(P) 10286: response to stress ->heat acclimation
(C) 16021: other membranes ->integral component of membrane
(P) 1666: response to stress ->response to hypoxia
(P) 34605: response to stress ->cellular response to heat
(P) 34620: response to stress ->cellular response to unfolded protein
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42542: response to stress ->response to hydrogen peroxide
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 71456: response to stress ->cellular response to hypoxia
(P) 9408: response to abiotic or biotic stimulus ->response to heat
(C) 9507: chloroplast ->chloroplast
(P) 9644: response to abiotic or biotic stimulus ->response to high light intensity
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 3 2 6
rice 1 2 3
sorghum 1 4 5
physcomitrella 1 1 2
Total 2 6 13 21
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EFEVPDLDLALNLDEE at 379/448 in soybean Gm028719 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID541
           Torenia
           35S:AtCDS-SRDX
           2007-07-06
           flower bulk, 1 of 5 lines 
           hyponastic petals 
[Publication link]		
           
          

         

         

          Comment