fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G28350 (ARF10)

Alias ARF10
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / ETTIN/ARF3
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description auxin response factor 10 (.1)
TAIR annotation Involved in root cap cell differentiation. (.1)
Gene model
Gene model cDNA support
AT2G28350.1 42
Entry clone (w/o stop) IE_07B06_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10154: developmental processes ->fruit development
(P) 31540: other metabolic processes ->regulation of anthocyanin biosynthetic process
(F) 35198: DNA or RNA binding ->miRNA binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48366: developmental processes ->leaf development
(P) 48441: developmental processes ->petal development
(P) 48442: developmental processes ->sepal development
(P) 48589: other biological processes ->developmental growth
(P) 48829: developmental processes ->root cap development
(P) 51301: other cellular processes ->cell division
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7389: developmental processes ->pattern specification process
(P) 9734: signal transduction ->auxin-activated signaling pathway
(P) 9738: other cellular processes ->abscisic acid-activated signaling pathway
(P) 9743: other biological processes ->response to carbohydrate
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR160a: 3'-ACCGTATGTCCCTCGGTCCGT-5'
5'--3'

miR160b: 3'-ACCGTATGTCCCTCGGTCCGT-5'
5'--3'

miR160c: 3'-ACCGTATGTCCCTCGGTCCGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 4 7
soybean 1 3 3 7
rice 1 2 3
sorghum 1 2 3
physcomitrella
Total 2 7 11 20
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EDVGRTLDLQLLESYE at 634/700 in poplar Pt043428 (Type III)
EDVGRTLDLSLFGSYE at 604/701 in soybean Gm033075 (Type II)
LHLNNKLQLGLLPTKV at 444/670 in soybean Gm037915 (Type Ia)
QLGFPLDLQFQLPSFSGN at 408/690 in poplar Pt021330 (Type II)
DHQLNKLHLGLLHSGS at 473/698 in rice Os036356 (Type III)
HAHTTIDLRVPPFILCN at 45/697 in soybean Gm031273 (Type II)
EDVGRTLDLSLLGSYE at 634/705 in poplar Pt006126 (Type III)
LHLNNKLQLGLLPTNV at 462/700 in soybean Gm033946 (Type II)
DHQLSKLHLGLFQGGG at 465/776 in sorghum Sb020833 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(07Feb)

          
Plasmid construction -> The work interrupted(07Feb)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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