fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G31220 (bHLH010)

Alias bHLH010
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / TRANSPARENT TESTA8
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
TAIR annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G06170.2); Has 1822 Blast hits to 1822 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 26; Plants - 1767; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G31220.1 8
Entry clone (w/o stop) IE_07B09
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 48658: developmental processes ->anther wall tapetum development
(P) 52543: other cellular processes ->callose deposition in cell wall
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9555: developmental processes ->pollen development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella 1 1
Total 1 1
Repression motif 
TKVLDQLQLDLHHVAG at 400/458 in AT2G31220.1
Repression motif
in putative orthologs		 
IAVLQELQLDLLQASG at 542/567 in physcomitrella Pp020664 (Type Ib)
Status
Plasmid construction -> The work interrupted(06Feb)
Plasmid construction -> The work interrupted(06Feb)
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment