Alias |
SNZ |
TF Classification |
|
TAIR short description |
SCHNARCHZAPFEN, Integrase-type DNA-binding superfamily protein (.1) |
TAIR annotation |
Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. (.1) |
Gene model |
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Entry clone (w/o stop) |
IE_0061 |
External link |
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Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(C) 5634: nucleus |
->nucleus |
(C) 5730: nucleus |
->nucleolus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
(P) 7275: developmental processes |
->multicellular organism development |
(P) 9873: other cellular processes |
->ethylene-activated signaling pathway |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miR172a: 3'-TACGTCGTAGTAGTTCTAAGA-5' |
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5'--3'
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miR172b: 3'-TACGTCGTAGTAGTTCTAAGA-5' |
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5'--3'
|
miR172c: 3'-GACGTCGTAGTAGTTCTAAGA-5' |
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5'--3'
|
miR172d: 3'-GACGTCGTAGTAGTTCTAAGA-5' |
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|
5'--3'
|
miR172e: 3'-TACGTCGTAGTAGTTCTAAGG-5' |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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soybean |
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rice |
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sorghum |
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physcomitrella |
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Total |
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0E0 |
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Repression motif |
MLDLNLGILST at 0/325 in AT2G39250.1 GNEHNDLELSLGISSS at 248/325 in AT2G39250.1
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Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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