fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G45460

Alias
TF Classification
FioreDBFHA (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBFHA (v3.0), FHA (v1.0)
DATFFHA
TAIR short description SMAD/FHA domain-containing protein (.1.2.3)
TAIR annotation SMAD/FHA domain-containing protein ; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); Has 90361 Blast hits to 52813 proteins in 2902 species: Archae - 1014; Bacteria - 17012; Metazoa - 41214; Fungi - 7482; Plants - 4542; Viruses - 303; Other Eukaryotes - 18794 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G45460.1 15
AT2G45460.2 14
AT2G45460.3 14
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 2 3 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
NTSVDIDLNLNPGNMDG at 555/898 in poplar Pt017960 (Type Ia)
NNLRHMLQLRLGLKKR at 292/976 in sorghum Sb022397 (Type Ib)
GQRSQHLSLKLQRLEI at 515/976 in sorghum Sb022397 (Type Ib)
MEVARQLMLCLWIQRA at 815/976 in sorghum Sb022397 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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