fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G45880 (BAM7, BMY4)

Alias BAM7, BMY4
TF Classification
FioreDBBZR (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBBES1 (v3.0), BES1 (v1.0)
DATFBES1
TAIR short description BETA-AMYLASE 4, beta-amylase 7 (.1)
TAIR annotation beta-amylase 7 (BAM7); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 2 (TAIR:AT4G00490.1); Has 965 Blast hits to 963 proteins in 157 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 3; Plants - 810; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G45880.1 14
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 102229: hydrolase activity ->amylopectin maltohydrolase activity
(F) 16161: hydrolase activity ->beta-amylase activity
(P) 272: other metabolic processes ->polysaccharide catabolic process
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48831: developmental processes ->regulation of shoot system development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 2 6
soybean 1 2 2 5
rice 1 1
sorghum 1 1 2
physcomitrella 1 1 2
Total 2 8 6 16
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
FQMVRELKLKLQVVMS at 316/684 in soybean Gm050143 (Type Ia)
FQMVRELKLKLQVVIS at 577/1488 in soybean Gm026053 (Type II)
FEIVRELQLKLQVVMS at 203/598 in physcomitrella Pp019116 (Type III)
FQMIRELKLKLQVVMS at 125/572 in sorghum Sb023026 (Type II)
FQMVHELKLKLQVVMS at 312/680 in poplar Pt017474 (Type II)
FQMVRELKLKLQVVMS at 334/702 in poplar Pt039068 (Type Ia)
FQMVRELKLKLQVVIS at 336/730 in soybean Gm026055 (Type II)
FQMVRDLKLKLQVVMS at 170/539 in poplar Pt016594 (Type III)
FHMIRELKLKLQVVMS at 165/533 in rice Os034919 (Type II)
FQMVRELKLKLQVVMS at 334/561 in poplar Pt039069 (Type II)
FQMVHELKLKLQVVMS at 312/680 in poplar Pt017473 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment