fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G47680

Alias
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTFC3H-type 1(Zn) / putative zinc finger protein
AtTFDB
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description zinc finger (CCCH type) helicase family protein (.1)
TAIR annotation zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G47680.1 6
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3729: DNA or RNA binding ->mRNA binding
(F) 4386: hydrolase activity ->helicase activity
(F) 46872: other binding ->metal ion binding
(F) 5524: other binding ->ATP binding
(P) 6139: other cellular processes ->nucleobase-containing compound metabolic process
(C) 9507: chloroplast ->chloroplast
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice 1 1
sorghum 1 1
physcomitrella
Total 3 3
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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