fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G11260 (WOX5B, WOX5)

Alias WOX5B, WOX5
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / REVOLUTA/INTERFASCICULAR FIBERLESS1
AtTFDBHomeobox / WOX
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)
TAIR annotation Arabidopsis thaliana WOX5 protein mRNA (.1)
Gene model
Gene model cDNA support
AT3G11260.1 7
Entry clone (w/o stop) IE_01G06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10078: developmental processes ->maintenance of root meristem identity
(P) 1902459: other biological processes ->positive regulation of stem cell population maintenance
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 3
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 3 7
Repression motif 
EKVIETLQLFPVNSFE at 119/182 in AT3G11260.1
Repression motif
in putative orthologs		 
EQVIETLQLFPLKSFD at 130/181 in poplar Pt042847 (Type II)
EMDRPQLDLRLSFL at 173/181 in poplar Pt042847 (Type II)
ERVIETLQLFPLNSFG at 129/180 in soybean Gm031835 (Type II)
ERVIETLQLFPLNSFD at 130/181 in poplar Pt034082 (Type Ia)
EMDHPHLDLRLSFV at 173/181 in poplar Pt034082 (Type Ia)
DRVIETLQLFPLNSFG at 125/177 in soybean Gm005098 (Type Ia)
TREVETLELFPLKSYV at 162/218 in sorghum Sb009023 (Type Ib)
ERVMETLQLFPLNSFG at 120/171 in soybean Gm048522 (Type II)
TREVETLELFPLKSYD at 148/200 in rice Os004760 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project Adventitious root (and shoot?) formation from seedling. Callus and somatic embryo formation from root of the seedling.
adventitious shoot formation (direct input), abnormal root (direct input), somatic embryo formation (direct input), callus formation (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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